Magnesium in PDB 6k8b: The Open State of RGLG1 Vwa Domain

All present enzymatic activity of The Open State of RGLG1 Vwa Domain:
2.3.2.27;

The structure of The Open State of RGLG1 Vwa Domain, PDB code: 6k8b was solved by Q.Wang, Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.96 / 2.21
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	136.180, 136.180, 56.860, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 19

The structure of The Open State of RGLG1 Vwa Domain also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Magnesium atom in the The Open State of RGLG1 Vwa Domain (pdb code 6k8b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Open State of RGLG1 Vwa Domain, PDB code: 6k8b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Open State of RGLG1 Vwa Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Open State of RGLG1 Vwa Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg504 b:31.0 occ:1.00 OG1 A:THR258 2.2 35.5 1.0 O A:HOH604 2.3 37.0 1.0 OG1 A:THR164 2.4 32.1 1.0 OG A:SER166 2.4 31.4 1.0 OE2 B:GLU153 2.4 35.5 1.0 O A:HOH607 2.7 42.5 1.0 O A:GLN288 3.0 38.0 1.0 CB A:SER166 3.2 38.7 1.0 CB A:THR164 3.2 33.9 1.0 CD B:GLU153 3.3 36.8 1.0 CB A:THR258 3.3 34.0 1.0 OE1 B:GLU153 3.5 39.3 1.0 CG2 A:THR258 3.6 34.2 1.0 CG2 A:THR164 3.9 35.2 1.0 OD1 A:ASP286 4.0 36.4 1.0 C A:GLN288 4.1 37.3 1.0 N A:SER166 4.1 37.1 1.0 CB A:GLN288 4.1 36.4 1.0 CA A:SER166 4.3 34.8 1.0 OD2 A:ASP162 4.3 44.6 1.0 OD2 A:ASP286 4.5 34.3 1.0 CA A:THR164 4.6 33.0 1.0 OD1 A:ASP162 4.6 40.6 1.0 CA A:GLN288 4.6 34.4 1.0 CA A:THR258 4.6 34.3 1.0 CG B:GLU153 4.7 38.3 1.0 C A:THR164 4.7 37.4 1.0 CG A:ASP286 4.7 37.8 1.0 N A:LYS165 4.9 34.1 1.0 CG A:ASP162 4.9 41.0 1.0 N A:THR258 5.0 33.4 1.0 N A:GLN288 5.0 34.2 1.0

Magnesium binding site 2 out of 2 in the The Open State of RGLG1 Vwa Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Open State of RGLG1 Vwa Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg504 b:27.6 occ:1.00 OG1 B:THR258 2.3 30.3 1.0 O B:HOH607 2.3 31.4 1.0 OG1 B:THR164 2.3 33.0 1.0 OG B:SER166 2.4 32.4 1.0 O B:HOH604 2.6 39.7 1.0 CB B:THR164 3.1 30.1 1.0 CB B:SER166 3.2 32.9 1.0 O B:GLN288 3.2 32.8 1.0 CB B:THR258 3.3 32.3 1.0 CG2 B:THR258 3.6 29.9 1.0 CG2 B:THR164 3.9 28.6 1.0 N B:SER166 4.0 30.9 1.0 OD1 B:ASP286 4.1 37.0 1.0 CA B:SER166 4.2 32.5 1.0 CB B:GLN288 4.2 29.8 1.0 C B:GLN288 4.2 34.2 1.0 OD2 B:ASP162 4.4 40.8 1.0 CA B:THR164 4.5 28.9 1.0 OD1 B:ASP162 4.5 40.1 1.0 OD2 B:ASP286 4.5 34.3 1.0 C B:THR164 4.6 34.3 1.0 CA B:THR258 4.7 32.2 1.0 N B:LYS165 4.7 31.2 1.0 CA B:GLN288 4.7 33.6 1.0 CG B:ASP286 4.8 38.4 1.0 O B:HOH688 4.9 38.4 1.0 CG B:ASP162 4.9 39.6 1.0

Q.Wang, Y.Wu. The Open State of RGLG1 Vwa Domain To Be Published.