Magnesium in PDB 6kbd: Fused to-MTBCSM1 with 2DATP
Protein crystallography data
The structure of Fused to-MTBCSM1 with 2DATP, PDB code: 6kbd
was solved by
T.Li,
Y.Huo,
T.Jiang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.00 /
3.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.801,
53.317,
124.134,
90.00,
97.78,
90.00
|
R / Rfree (%)
|
23.7 /
28.4
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Fused to-MTBCSM1 with 2DATP
(pdb code 6kbd). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the
Fused to-MTBCSM1 with 2DATP, PDB code: 6kbd:
Jump to Magnesium binding site number:
1;
2;
Magnesium binding site 1 out
of 2 in 6kbd
Go back to
Magnesium Binding Sites List in 6kbd
Magnesium binding site 1 out
of 2 in the Fused to-MTBCSM1 with 2DATP
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Fused to-MTBCSM1 with 2DATP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg903
b:14.4
occ:1.00
|
O1A
|
A:DTP902
|
1.6
|
63.9
|
1.0
|
OD1
|
A:ASP555
|
1.9
|
68.8
|
1.0
|
O1G
|
A:DTP902
|
1.9
|
54.0
|
1.0
|
O
|
A:VAL556
|
2.0
|
51.3
|
1.0
|
O1B
|
A:DTP902
|
2.3
|
65.0
|
1.0
|
PA
|
A:DTP902
|
2.9
|
77.5
|
1.0
|
C
|
A:VAL556
|
3.0
|
54.8
|
1.0
|
CG
|
A:ASP555
|
3.1
|
72.6
|
1.0
|
NZ
|
A:LYS687
|
3.1
|
55.1
|
1.0
|
O3A
|
A:DTP902
|
3.1
|
67.5
|
1.0
|
OD2
|
A:ASP627
|
3.2
|
61.3
|
1.0
|
PB
|
A:DTP902
|
3.2
|
55.5
|
1.0
|
PG
|
A:DTP902
|
3.3
|
63.8
|
1.0
|
O3B
|
A:DTP902
|
3.6
|
76.4
|
1.0
|
OD2
|
A:ASP555
|
3.7
|
70.0
|
1.0
|
O5'
|
A:DTP902
|
3.7
|
83.1
|
1.0
|
CA
|
A:ASP557
|
3.7
|
62.0
|
1.0
|
N
|
A:ASN558
|
3.8
|
49.1
|
1.0
|
N
|
A:ASP557
|
3.8
|
52.3
|
1.0
|
O
|
A:ASP555
|
3.9
|
52.6
|
1.0
|
C
|
A:ASP557
|
3.9
|
49.4
|
1.0
|
C
|
A:ASP555
|
4.0
|
58.8
|
1.0
|
O2G
|
A:DTP902
|
4.0
|
77.8
|
1.0
|
CA
|
A:VAL556
|
4.1
|
54.3
|
1.0
|
O2A
|
A:DTP902
|
4.1
|
72.6
|
1.0
|
CB
|
A:ASP555
|
4.2
|
54.5
|
1.0
|
CG
|
A:ASP627
|
4.3
|
66.8
|
1.0
|
N
|
A:VAL556
|
4.3
|
53.6
|
1.0
|
N
|
A:LEU559
|
4.3
|
58.5
|
1.0
|
O3G
|
A:DTP902
|
4.4
|
66.4
|
1.0
|
CE
|
A:LYS687
|
4.5
|
57.0
|
1.0
|
CB
|
A:VAL556
|
4.5
|
55.4
|
1.0
|
O2B
|
A:DTP902
|
4.5
|
53.0
|
1.0
|
O
|
A:ASP557
|
4.6
|
58.0
|
1.0
|
CA
|
A:ASP555
|
4.7
|
54.1
|
1.0
|
CB
|
A:LEU559
|
4.7
|
60.0
|
1.0
|
CA
|
A:ASN558
|
4.8
|
59.2
|
1.0
|
CG1
|
A:VAL556
|
4.8
|
60.1
|
1.0
|
OD1
|
A:ASP627
|
4.9
|
57.1
|
1.0
|
|
Magnesium binding site 2 out
of 2 in 6kbd
Go back to
Magnesium Binding Sites List in 6kbd
Magnesium binding site 2 out
of 2 in the Fused to-MTBCSM1 with 2DATP
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Fused to-MTBCSM1 with 2DATP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg904
b:21.9
occ:1.00
|
OD1
|
A:ASP627
|
2.4
|
57.1
|
1.0
|
O2A
|
A:DTP902
|
2.5
|
72.6
|
1.0
|
OD2
|
A:ASP555
|
2.6
|
70.0
|
1.0
|
OD2
|
A:ASP628
|
2.7
|
69.2
|
1.0
|
PA
|
A:DTP902
|
3.3
|
77.5
|
1.0
|
CG
|
A:ASP627
|
3.5
|
66.8
|
1.0
|
O1A
|
A:DTP902
|
3.6
|
63.9
|
1.0
|
C5'
|
A:DTP902
|
3.6
|
75.9
|
1.0
|
O5'
|
A:DTP902
|
3.7
|
83.1
|
1.0
|
CG
|
A:ASP628
|
3.7
|
62.5
|
1.0
|
CG
|
A:ASP555
|
3.8
|
72.6
|
1.0
|
OD2
|
A:ASP627
|
3.9
|
61.3
|
1.0
|
CB
|
A:ASP628
|
4.0
|
57.4
|
1.0
|
O
|
A:ASP627
|
4.1
|
71.5
|
1.0
|
C
|
A:ASP627
|
4.3
|
56.8
|
1.0
|
O3'
|
A:DTP901
|
4.3
|
79.6
|
1.0
|
OD1
|
A:ASP555
|
4.4
|
68.8
|
1.0
|
C3'
|
A:DTP901
|
4.4
|
81.3
|
1.0
|
N
|
A:ASP627
|
4.5
|
53.1
|
1.0
|
N
|
A:ASP628
|
4.7
|
57.3
|
1.0
|
CB
|
A:ASP627
|
4.8
|
56.6
|
1.0
|
CA
|
A:ASP627
|
4.8
|
51.7
|
1.0
|
O3A
|
A:DTP902
|
4.8
|
67.5
|
1.0
|
OD1
|
A:ASP628
|
4.8
|
63.2
|
1.0
|
CA
|
A:ASP628
|
4.8
|
58.8
|
1.0
|
CB
|
A:ASP555
|
5.0
|
54.5
|
1.0
|
|
Reference:
S.Zhang,
T.Li,
Y.Huo,
J.Yang,
J.Fleming,
W.Wei,
S.Gu,
L.Bi,
T.Jiang,
H.Zhang.
Fused to-MTBCSM1 with 2DATP To Be Published.
Page generated: Mon Dec 14 23:05:10 2020
|