Magnesium in PDB 6kft: Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1

Protein crystallography data

The structure of Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1, PDB code: 6kft was solved by Q.Sun, Y.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 2.51
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.362, 106.362, 303.858, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 25.4

Other elements in 6kft:

The structure of Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1 (pdb code 6kft). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1, PDB code: 6kft:

Magnesium binding site 1 out of 1 in 6kft

Go back to Magnesium Binding Sites List in 6kft
Magnesium binding site 1 out of 1 in the Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:58.6
occ:1.00
O2G A:GTP301 1.8 62.1 1.0
OG1 A:THR24 1.9 60.2 1.0
OG1 A:THR42 1.9 59.4 1.0
O2B A:GTP301 1.9 60.2 1.0
O A:HOH403 2.0 51.4 1.0
O A:HOH401 2.0 44.2 1.0
CB A:THR24 3.0 60.0 1.0
CB A:THR42 3.1 61.2 1.0
PB A:GTP301 3.2 59.1 1.0
PG A:GTP301 3.2 63.5 1.0
O3B A:GTP301 3.5 62.1 1.0
N A:THR42 3.7 61.9 1.0
OD2 A:ASP65 3.8 62.0 1.0
O A:HOH406 3.9 51.0 1.0
CA A:THR42 3.9 63.0 1.0
N A:THR24 4.0 55.1 1.0
CG2 A:THR24 4.0 61.8 1.0
CA A:THR24 4.0 56.9 1.0
OD1 A:ASP65 4.1 61.2 1.0
O3G A:GTP301 4.1 64.1 1.0
O2A A:GTP301 4.2 61.0 1.0
CG2 A:THR42 4.2 62.5 1.0
O1B A:GTP301 4.2 60.4 1.0
O1G A:GTP301 4.2 63.8 1.0
O3A A:GTP301 4.3 60.0 1.0
CG A:ASP65 4.3 61.2 1.0
O1A A:GTP301 4.3 59.8 1.0
PA A:GTP301 4.4 59.6 1.0
O A:VAL40 4.6 63.5 1.0
O A:THR66 4.7 58.4 1.0
C A:ALA41 4.8 62.8 1.0

Reference:

Q.Sun, Y.Li. Mvm NS2 Nes in Complex with CRM1-Ran-RANBP1 To Be Published.
Page generated: Mon Dec 14 23:06:00 2020

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