Magnesium in PDB 6kks: Structural Insights Into Target Dna Recognition By R2R3-Type Myb Transcription Factor

The structure of Structural Insights Into Target Dna Recognition By R2R3-Type Myb Transcription Factor, PDB code: 6kks was solved by B.Wang, Q.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.084, 63.927, 73.956, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 24.6

The binding sites of Magnesium atom in the Structural Insights Into Target Dna Recognition By R2R3-Type Myb Transcription Factor (pdb code 6kks). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural Insights Into Target Dna Recognition By R2R3-Type Myb Transcription Factor, PDB code: 6kks:

Magnesium binding site 1 out of 1 in the Structural Insights Into Target Dna Recognition By R2R3-Type Myb Transcription Factor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Insights Into Target Dna Recognition By R2R3-Type Myb Transcription Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:30.7 occ:1.00 O A:ARG103 2.2 29.9 1.0 O A:HOH325 2.2 42.7 1.0 O A:ALA97 2.3 26.5 1.0 O A:HOH327 2.4 39.5 1.0 O A:HOH328 2.5 36.5 1.0 O A:VAL100 2.5 27.3 1.0 C A:ALA97 3.3 27.4 1.0 C A:ARG103 3.3 30.7 1.0 C A:VAL100 3.6 27.6 1.0 N A:ARG103 3.6 29.3 1.0 O A:HOH330 4.0 49.4 1.0 CB A:ALA97 4.0 27.2 1.0 CA A:ARG103 4.0 29.4 1.0 CA A:ALA97 4.0 27.0 1.0 N A:GLY102 4.1 29.8 1.0 N A:LYS98 4.2 29.9 1.0 N A:VAL100 4.3 28.3 1.0 N A:THR104 4.4 28.7 1.0 CA A:VAL100 4.4 27.8 1.0 CA A:LYS98 4.4 32.2 1.0 N A:PRO101 4.5 29.3 1.0 C A:PRO101 4.5 28.7 1.0 CA A:PRO101 4.5 29.7 1.0 C A:GLY102 4.6 30.5 1.0 CB A:ARG103 4.7 29.6 1.0 C A:LYS98 4.7 30.8 1.0 CB A:VAL100 4.7 28.7 1.0 CA A:THR104 4.7 28.8 1.0 CA A:GLY102 4.8 30.2 1.0 O A:LYS98 4.9 31.2 1.0

B.Wang, Q.Luo, Y.Li, L.Yin, N.Zhou, X.Li, J.Gan, A.Dong. Structural Insights Into Target Dna Recognition By R2R3-Myb Transcription Factors. Nucleic Acids Res. 2019.
ISSN: ESSN 1362-4962
PubMed: 31733060
DOI: 10.1093/NAR/GKZ1081