Magnesium in PDB 6klf: Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142

Enzymatic activity of Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142

All present enzymatic activity of Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142:
2.4.1.18;

Protein crystallography data

The structure of Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142, PDB code: 6klf was solved by R.Suzuki, E.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.29 / 2.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 133.745, 133.745, 184.710, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 19.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142 (pdb code 6klf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142, PDB code: 6klf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6klf

Go back to Magnesium Binding Sites List in 6klf
Magnesium binding site 1 out of 2 in the Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:24.9
occ:1.00
O A:HOH1104 1.8 13.2 1.0
OD1 A:ASP612 2.0 19.3 1.0
O A:HOH995 2.1 11.5 1.0
O A:HOH1302 2.2 32.7 1.0
O A:HOH987 2.4 13.0 1.0
CG A:ASP612 3.1 19.8 1.0
OD2 A:ASP612 3.6 19.3 1.0
O A:HOH916 4.1 18.6 1.0
N A:ASP612 4.1 20.3 1.0
O A:ASP612 4.1 17.0 1.0
O A:HOH1044 4.2 26.8 1.0
O A:HOH998 4.3 19.8 1.0
CB A:ASP612 4.4 19.7 1.0
O A:LEU613 4.5 18.3 1.0
C A:ASP612 4.5 19.3 1.0
CA A:ASP612 4.5 18.9 1.0
O A:HOH1212 4.8 24.5 1.0
O A:HOH1276 4.9 21.6 1.0

Magnesium binding site 2 out of 2 in 6klf

Go back to Magnesium Binding Sites List in 6klf
Magnesium binding site 2 out of 2 in the Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Branching Enzyme D434A Mutant From Cyanothece Sp. Atcc 51142 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:38.3
occ:1.00
O A:HOH1339 1.9 21.9 1.0
O A:HOH1274 2.1 20.3 1.0
O A:HOH944 2.5 22.0 1.0
OE1 A:GLU194 3.9 25.1 1.0
O A:TRP163 4.1 23.6 1.0
O A:HOH1075 4.7 27.1 1.0
OE2 A:GLU194 4.7 23.0 1.0
CD A:GLU194 4.7 23.8 1.0

Reference:

E.Y.Mannai, R.Deto, M.Kuroki, R.Suzuki, E.Suzuki. Branching Enzymes From Amylopectin-Producing Cyanobacteria Discriminate Structure of Alpha-Glucan Independently of the Catalytic Specificities To Be Published.
Page generated: Mon Dec 14 23:06:14 2020

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