Magnesium in PDB 6km9: Crystal Structure of Suca From Vibrio Vulnificus

All present enzymatic activity of Crystal Structure of Suca From Vibrio Vulnificus:
1.2.4.2;

The structure of Crystal Structure of Suca From Vibrio Vulnificus, PDB code: 6km9 was solved by P.W.Seo, J.S.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.38 / 2.72
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	84.271, 76.708, 144.579, 90.00, 100.56, 90.00
R / Rfree (%)	19.2 / 24.9

The structure of Crystal Structure of Suca From Vibrio Vulnificus also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of Suca From Vibrio Vulnificus (pdb code 6km9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Suca From Vibrio Vulnificus, PDB code: 6km9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Suca From Vibrio Vulnificus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Suca From Vibrio Vulnificus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:33.2 occ:1.00 OD1 A:ASN393 2.0 29.3 1.0 O1B A:TPP1003 2.1 26.9 1.0 O1A A:TPP1003 2.1 27.8 1.0 OD1 A:ASP360 2.2 30.4 1.0 O A:HOH1121 2.2 25.6 1.0 O A:VAL395 2.3 34.2 1.0 PB A:TPP1003 3.0 33.6 1.0 CG A:ASN393 3.0 30.4 1.0 PA A:TPP1003 3.2 29.8 1.0 CG A:ASP360 3.3 32.9 1.0 O2B A:TPP1003 3.3 30.8 1.0 O3A A:TPP1003 3.3 26.6 1.0 ND2 A:ASN393 3.4 26.7 1.0 C A:VAL395 3.5 31.8 1.0 OD2 A:ASP360 3.8 35.1 1.0 N A:ASP360 4.1 28.5 1.0 O7 A:TPP1003 4.1 27.1 1.0 O A:HOH1116 4.2 25.6 1.0 O A:VAL391 4.2 34.5 1.0 O2A A:TPP1003 4.2 26.4 1.0 CA A:GLY396 4.3 27.8 1.0 O3B A:TPP1003 4.3 29.2 1.0 N A:VAL395 4.3 29.9 1.0 N A:GLY396 4.3 29.4 1.0 N A:ASN393 4.4 30.8 1.0 CB A:ASN393 4.4 29.7 1.0 CB A:ASP360 4.6 29.8 1.0 CA A:VAL395 4.6 30.8 1.0 CA A:ASN393 4.8 29.8 1.0 N A:SER361 4.8 26.5 1.0 CA A:GLY359 4.8 29.4 1.0 CG1 A:VAL395 4.8 30.4 1.0 C A:ASN393 4.8 29.9 1.0 CA A:ASP360 4.8 27.8 1.0 N A:GLN394 4.9 30.8 1.0 C A:GLY359 4.9 28.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Suca From Vibrio Vulnificus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Suca From Vibrio Vulnificus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1002 b:29.2 occ:1.00 O1A B:TPP1003 2.1 27.2 1.0 O3B B:TPP1003 2.1 28.7 1.0 OD1 B:ASN393 2.2 28.4 1.0 O B:VAL395 2.2 28.9 1.0 OD1 B:ASP360 2.3 33.6 1.0 PB B:TPP1003 3.0 31.0 1.0 CG B:ASN393 3.1 28.6 1.0 PA B:TPP1003 3.1 31.5 1.0 O1B B:TPP1003 3.2 31.2 1.0 O3A B:TPP1003 3.3 28.9 1.0 C B:VAL395 3.4 28.6 1.0 ND2 B:ASN393 3.4 26.7 1.0 CG B:ASP360 3.4 31.8 1.0 OD2 B:ASP360 3.9 33.9 1.0 O7 B:TPP1003 4.1 31.5 1.0 CA B:GLY396 4.1 28.3 1.0 N B:ASP360 4.1 28.9 1.0 N B:GLY396 4.2 29.0 1.0 O2A B:TPP1003 4.2 31.5 1.0 O2B B:TPP1003 4.3 28.0 1.0 N B:VAL395 4.3 27.9 1.0 O B:VAL391 4.4 31.2 1.0 CA B:VAL395 4.5 28.2 1.0 CB B:ASN393 4.5 28.4 1.0 N B:ASN393 4.6 27.9 1.0 CB B:ASP360 4.6 29.4 1.0 CG1 B:VAL395 4.6 26.9 1.0 N B:SER361 4.7 25.4 1.0 O B:HOH1109 4.7 30.4 1.0 CA B:GLY359 4.9 28.5 1.0 CA B:ASP360 4.9 27.9 1.0 CA B:ASN393 4.9 29.6 1.0 C B:GLY359 4.9 27.8 1.0 C B:ASN393 4.9 31.6 1.0

P.W.Seo, J.S.Kim. Crystal Structure of Suca From Vibrio Vulnificus at 2.72 Angstroms Resolution. To Be Published.