Magnesium in PDB 6kou: 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Magnesium atom in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions (pdb code 6kou). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 24 binding sites of Magnesium where determined in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions, PDB code: 6kou:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:99.0 occ:1.00 OE2 A:GLU195 2.5 95.4 1.0 OD2 A:ASP191 2.5 0.8 1.0 OD1 A:ASP191 2.6 0.8 1.0 CG A:ASP191 2.9 0.8 1.0 CD A:GLU195 3.7 95.4 1.0 HG B:SER254 3.9 0.7 1.0 HB2 B:SER257 4.3 96.6 1.0 CB A:ASP191 4.3 0.8 1.0 OE1 A:GLU195 4.4 95.4 1.0 OG B:SER254 4.5 0.7 1.0 O A:ASP191 4.5 0.8 1.0 HB3 A:ASP191 4.5 0.8 1.0 HG3 A:GLU195 4.8 95.4 1.0 CG A:GLU195 4.8 95.4 1.0 HB2 A:ASP191 4.9 0.8 1.0 HG2 A:GLU195 4.9 95.4 1.0

Magnesium binding site 2 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:97.4 occ:1.00 OE2 A:GLU227 2.1 0.9 1.0 CD A:GLU227 3.2 0.9 1.0 OD1 B:ASP191 3.3 0.3 1.0 OE1 A:GLU227 3.6 0.9 1.0 HA B:ASP191 3.6 0.3 1.0 HG B:SER194 3.9 96.0 1.0 HB2 B:SER194 3.9 96.0 1.0 CG B:ASP191 4.4 0.3 1.0 HG3 A:GLU227 4.5 0.9 1.0 CG A:GLU227 4.5 0.9 1.0 CB B:SER194 4.5 96.0 1.0 HB3 B:SER194 4.5 96.0 1.0 CA B:ASP191 4.5 0.3 1.0 O B:ASP191 4.5 0.3 1.0 OG B:SER194 4.5 96.0 1.0 O A:GLU227 4.6 0.9 1.0 HH12 B:ARG130 4.7 0.7 1.0 HG2 A:GLU233 4.8 0.1 1.0 HH11 B:ARG130 4.8 0.7 1.0 HG3 B:GLU195 4.9 95.8 1.0 NH1 B:ARG130 4.9 0.7 1.0 HG2 A:GLU227 4.9 0.9 1.0

Magnesium binding site 3 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:96.1 occ:1.00 OE2 B:GLU227 2.2 0.6 1.0 CD B:GLU227 3.2 0.6 1.0 OD1 A:ASP191 3.3 0.8 1.0 OE1 B:GLU227 3.6 0.6 1.0 HA A:ASP191 3.7 0.8 1.0 HG A:SER194 3.8 96.0 1.0 HB2 A:SER194 3.9 96.0 1.0 CG A:ASP191 4.4 0.8 1.0 CB A:SER194 4.5 96.0 1.0 HB3 A:SER194 4.5 96.0 1.0 HG3 B:GLU227 4.5 0.6 1.0 CG B:GLU227 4.5 0.6 1.0 OG A:SER194 4.5 96.0 1.0 CA A:ASP191 4.6 0.8 1.0 O A:ASP191 4.6 0.8 1.0 O B:GLU227 4.6 0.6 1.0 HH12 A:ARG130 4.7 0.6 1.0 HH11 A:ARG130 4.8 0.6 1.0 NH1 A:ARG130 4.9 0.6 1.0 HG3 A:GLU195 4.9 95.4 1.0 HG2 B:GLU227 5.0 0.6 1.0

Magnesium binding site 4 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:0.9 occ:1.00 OE2 B:GLU195 2.5 95.8 1.0 OD2 B:ASP191 2.5 0.3 1.0 OD1 B:ASP191 2.7 0.3 1.0 CG B:ASP191 2.9 0.3 1.0 CD B:GLU195 3.7 95.8 1.0 HG A:SER254 3.9 0.7 1.0 HB2 A:SER257 4.3 96.8 1.0 CB B:ASP191 4.3 0.3 1.0 OE1 B:GLU195 4.4 95.8 1.0 O B:ASP191 4.4 0.3 1.0 OG A:SER254 4.5 0.7 1.0 HB3 B:ASP191 4.5 0.3 1.0 CG B:GLU195 4.8 95.8 1.0 HG3 B:GLU195 4.8 95.8 1.0 HB2 B:ASP191 4.9 0.3 1.0 HG2 B:GLU195 4.9 95.8 1.0 HA B:ASP191 5.0 0.3 1.0

Magnesium binding site 5 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:0.7 occ:1.00 OE2 C:GLU195 2.4 95.7 1.0 OD2 C:ASP191 2.5 1.0 1.0 OD1 C:ASP191 2.6 1.0 1.0 CG C:ASP191 2.9 1.0 1.0 CD C:GLU195 3.7 95.7 1.0 HG D:SER254 3.9 0.5 1.0 OE1 C:GLU195 4.3 95.7 1.0 HB2 D:SER257 4.3 96.4 1.0 CB C:ASP191 4.3 1.0 1.0 O C:ASP191 4.4 1.0 1.0 OG D:SER254 4.5 0.5 1.0 HB3 C:ASP191 4.5 1.0 1.0 CG C:GLU195 4.7 95.7 1.0 HG3 C:GLU195 4.8 95.7 1.0 HG2 C:GLU195 4.9 95.7 1.0 HB2 C:ASP191 4.9 1.0 1.0 HA C:ASP191 5.0 1.0 1.0

Magnesium binding site 6 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:97.4 occ:1.00 OE2 C:GLU227 2.1 0.1 1.0 CD C:GLU227 3.2 0.1 1.0 OD1 D:ASP191 3.3 0.9 1.0 OE1 C:GLU227 3.6 0.1 1.0 HA D:ASP191 3.6 0.9 1.0 HG D:SER194 3.8 96.1 1.0 HB2 D:SER194 3.9 96.1 1.0 CG D:ASP191 4.4 0.9 1.0 HG3 C:GLU227 4.5 0.1 1.0 CG C:GLU227 4.5 0.1 1.0 CB D:SER194 4.5 96.1 1.0 HB3 D:SER194 4.5 96.1 1.0 OG D:SER194 4.5 96.1 1.0 O D:ASP191 4.5 0.9 1.0 CA D:ASP191 4.5 0.9 1.0 O C:GLU227 4.6 0.1 1.0 HG3 C:GLU233 4.7 0.4 1.0 HH12 D:ARG130 4.7 0.3 1.0 HH11 D:ARG130 4.8 0.3 1.0 HG3 D:GLU195 4.9 95.7 1.0 NH1 D:ARG130 4.9 0.3 1.0 HG2 C:GLU227 4.9 0.1 1.0

Magnesium binding site 7 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:96.1 occ:1.00 OE2 D:GLU227 2.1 0.3 1.0 CD D:GLU227 3.2 0.3 1.0 OD1 C:ASP191 3.3 1.0 1.0 OE1 D:GLU227 3.6 0.3 1.0 HA C:ASP191 3.6 1.0 1.0 HB2 C:SER194 3.9 96.0 1.0 HG C:SER194 3.9 96.0 1.0 CG C:ASP191 4.4 1.0 1.0 HG3 D:GLU227 4.5 0.3 1.0 CG D:GLU227 4.5 0.3 1.0 CB C:SER194 4.5 96.0 1.0 HB3 C:SER194 4.5 96.0 1.0 CA C:ASP191 4.5 1.0 1.0 OG C:SER194 4.6 96.0 1.0 O C:ASP191 4.6 1.0 1.0 HG3 D:GLU233 4.6 0.1 1.0 O D:GLU227 4.7 0.3 1.0 HH12 C:ARG130 4.7 0.9 1.0 HH11 C:ARG130 4.8 0.9 1.0 HG3 C:GLU195 4.9 95.7 1.0 NH1 C:ARG130 4.9 0.9 1.0 HG2 D:GLU227 4.9 0.3 1.0 CB C:ASP191 5.0 1.0 1.0

Magnesium binding site 8 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:98.2 occ:1.00 OE2 D:GLU195 2.5 95.7 1.0 OD2 D:ASP191 2.5 0.9 1.0 OD1 D:ASP191 2.7 0.9 1.0 CG D:ASP191 2.9 0.9 1.0 CD D:GLU195 3.7 95.7 1.0 HG C:SER254 3.9 0.8 1.0 HB2 C:SER257 4.3 96.9 1.0 CB D:ASP191 4.3 0.9 1.0 OE1 D:GLU195 4.3 95.7 1.0 O D:ASP191 4.4 0.9 1.0 OG C:SER254 4.5 0.8 1.0 HB3 D:ASP191 4.5 0.9 1.0 CG D:GLU195 4.8 95.7 1.0 HG3 D:GLU195 4.8 95.7 1.0 HB2 D:ASP191 4.9 0.9 1.0 HG2 D:GLU195 4.9 95.7 1.0 HA D:ASP191 5.0 0.9 1.0

Magnesium binding site 9 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:0.6 occ:1.00 OE2 E:GLU195 2.5 96.0 1.0 OD2 E:ASP191 2.5 0.5 1.0 OD1 E:ASP191 2.7 0.5 1.0 CG E:ASP191 2.9 0.5 1.0 CD E:GLU195 3.7 96.0 1.0 HG F:SER254 3.9 0.8 1.0 HB2 F:SER257 4.3 96.8 1.0 CB E:ASP191 4.3 0.5 1.0 OE1 E:GLU195 4.3 96.0 1.0 O E:ASP191 4.4 0.5 1.0 OG F:SER254 4.5 0.8 1.0 HB3 E:ASP191 4.5 0.5 1.0 CG E:GLU195 4.8 96.0 1.0 HG3 E:GLU195 4.8 96.0 1.0 HG2 E:GLU195 4.9 96.0 1.0 HB2 E:ASP191 4.9 0.5 1.0 HA E:ASP191 5.0 0.5 1.0

Magnesium binding site 10 out of 24 in the 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 277 K Cryoem Structure of Sso-Kari in Complex with Magnesium Ions within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:97.3 occ:1.00 OE2 E:GLU227 2.1 0.7 1.0 CD E:GLU227 3.2 0.7 1.0 OD1 F:ASP191 3.3 0.5 1.0 OE1 E:GLU227 3.6 0.7 1.0 HA F:ASP191 3.6 0.5 1.0 OE2 E:GLU233 3.7 0.4 1.0 HG F:SER194 3.9 96.8 1.0 HB2 F:SER194 3.9 96.8 1.0 CG F:ASP191 4.4 0.5 1.0 HG3 E:GLU227 4.5 0.7 1.0 CG E:GLU227 4.5 0.7 1.0 CB F:SER194 4.5 96.8 1.0 HB3 F:SER194 4.5 96.8 1.0 OG F:SER194 4.5 96.8 1.0 CA F:ASP191 4.5 0.5 1.0 O F:ASP191 4.5 0.5 1.0 CD E:GLU233 4.6 0.4 1.0 O E:GLU227 4.6 0.7 1.0 HH12 F:ARG130 4.7 0.3 1.0 HH11 F:ARG130 4.8 0.3 1.0 NH1 F:ARG130 4.9 0.3 1.0 HG3 F:GLU195 4.9 96.5 1.0 HG2 E:GLU227 4.9 0.7 1.0 OE1 E:GLU233 4.9 0.4 1.0

C.Y.Chen, Y.C.Chang, B.L.Lin, C.H.Huang, M.D.Tsai. Temperature-Resolved Cryo-Em Uncovers Structural Bases of Temperature-Dependent Enzyme Functions. J.Am.Chem.Soc. V. 141 19983 2019.
ISSN: ESSN 1520-5126
PubMed: 31829582
DOI: 10.1021/JACS.9B10687