Magnesium in PDB 6kpe: 343 K Cryoem Structure of Sso-Kari in Complex with MG2+

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ (pdb code 6kpe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+, PDB code: 6kpe:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:0.3 occ:1.00 OD2 A:ASP191 2.5 0.3 1.0 OE2 A:GLU195 2.7 0.4 1.0 OD1 A:ASP191 3.1 0.3 1.0 CG A:ASP191 3.2 0.3 1.0 CD A:GLU195 4.0 0.4 1.0 HG B:SER254 4.1 1.0 1.0 CB A:ASP191 4.7 0.3 1.0 OE1 A:GLU195 4.7 0.4 1.0 OG B:SER254 4.7 1.0 1.0 HB2 B:SER257 4.7 0.6 1.0 HG3 A:GLU195 4.9 0.4 1.0 HB3 A:ASP191 4.9 0.3 1.0 CG A:GLU195 5.0 0.4 1.0

Magnesium binding site 2 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:0.3 occ:1.00 OD2 B:ASP191 2.5 0.2 1.0 OE2 B:GLU195 2.7 0.8 1.0 OD1 B:ASP191 3.1 0.2 1.0 CG B:ASP191 3.2 0.2 1.0 CD B:GLU195 4.0 0.8 1.0 HG A:SER254 4.1 0.8 1.0 OG A:SER254 4.7 0.8 1.0 CB B:ASP191 4.7 0.2 1.0 HB2 A:SER257 4.7 0.3 1.0 OE1 B:GLU195 4.7 0.8 1.0 HG3 B:GLU195 4.9 0.8 1.0 HB3 B:ASP191 4.9 0.2 1.0 CG B:GLU195 5.0 0.8 1.0

Magnesium binding site 3 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:0.9 occ:1.00 OD2 C:ASP191 2.5 0.9 1.0 OE2 C:GLU195 2.7 0.5 1.0 OD1 C:ASP191 3.1 0.9 1.0 CG C:ASP191 3.2 0.9 1.0 CD C:GLU195 4.0 0.5 1.0 HG D:SER254 4.1 0.6 1.0 HB2 D:SER257 4.6 0.4 1.0 CB C:ASP191 4.7 0.9 1.0 OE1 C:GLU195 4.7 0.5 1.0 OG D:SER254 4.7 0.6 1.0 HG3 C:GLU195 4.9 0.5 1.0 HB3 C:ASP191 4.9 0.9 1.0 CG C:GLU195 5.0 0.5 1.0

Magnesium binding site 4 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:0.9 occ:1.00 OD2 D:ASP191 2.5 0.1 1.0 OE2 D:GLU195 2.7 0.3 1.0 OD1 D:ASP191 3.1 0.1 1.0 CG D:ASP191 3.2 0.1 1.0 HG C:SER254 3.8 0.8 1.0 CD D:GLU195 4.0 0.3 1.0 OG C:SER254 4.4 0.8 1.0 HB2 C:SER257 4.5 0.3 1.0 CB D:ASP191 4.7 0.1 1.0 OE1 D:GLU195 4.7 0.3 1.0 HG3 D:GLU195 4.9 0.3 1.0 HB3 D:ASP191 4.9 0.1 1.0 CG D:GLU195 5.0 0.3 1.0

Magnesium binding site 5 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:1.0 occ:1.00 OD2 E:ASP191 2.5 0.6 1.0 OE2 E:GLU195 2.7 0.2 1.0 OD1 E:ASP191 3.1 0.6 1.0 CG E:ASP191 3.2 0.6 1.0 HG F:SER254 3.9 0.6 1.0 CD E:GLU195 4.0 0.2 1.0 OG F:SER254 4.5 0.6 1.0 HB2 F:SER257 4.5 0.1 1.0 CB E:ASP191 4.7 0.6 1.0 OE1 E:GLU195 4.7 0.2 1.0 HG3 E:GLU195 4.9 0.2 1.0 HB3 E:ASP191 4.9 0.6 1.0 CG E:GLU195 5.0 0.2 1.0

Magnesium binding site 6 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg401 b:0.1 occ:1.00 OD2 F:ASP191 2.5 0.3 1.0 OE2 F:GLU195 2.7 0.1 1.0 OD1 F:ASP191 3.1 0.3 1.0 CG F:ASP191 3.2 0.3 1.0 CD F:GLU195 4.0 0.1 1.0 HG E:SER254 4.1 0.5 1.0 CB F:ASP191 4.7 0.3 1.0 OE1 F:GLU195 4.7 0.1 1.0 OG E:SER254 4.7 0.5 1.0 HB2 E:SER257 4.7 0.0 1.0 HG3 F:GLU195 4.9 0.1 1.0 HB3 F:ASP191 4.9 0.3 1.0 CG F:GLU195 5.0 0.1 1.0

Magnesium binding site 7 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg401 b:0.6 occ:1.00 OD2 G:ASP191 2.5 0.2 1.0 OE2 G:GLU195 2.7 0.2 1.0 OD1 G:ASP191 3.1 0.2 1.0 CG G:ASP191 3.2 0.2 1.0 HG H:SER254 3.9 0.1 1.0 CD G:GLU195 4.0 0.2 1.0 HB2 H:SER257 4.5 0.9 1.0 OG H:SER254 4.5 0.1 1.0 CB G:ASP191 4.7 0.2 1.0 OE1 G:GLU195 4.7 0.2 1.0 HG3 G:GLU195 4.9 0.2 1.0 HB3 G:ASP191 4.9 0.2 1.0 CG G:GLU195 5.0 0.2 1.0

Magnesium binding site 8 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg401 b:0.5 occ:1.00 OD2 H:ASP191 2.5 0.3 1.0 OE2 H:GLU195 2.7 0.5 1.0 OD1 H:ASP191 3.1 0.3 1.0 CG H:ASP191 3.2 0.3 1.0 HG G:SER254 3.9 0.8 1.0 CD H:GLU195 4.0 0.5 1.0 OG G:SER254 4.5 0.8 1.0 HB2 G:SER257 4.5 0.5 1.0 CB H:ASP191 4.7 0.3 1.0 OE1 H:GLU195 4.7 0.5 1.0 HG3 H:GLU195 4.9 0.5 1.0 HB3 H:ASP191 4.9 0.3 1.0 CG H:GLU195 5.0 0.5 1.0

Magnesium binding site 9 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg401 b:0.3 occ:1.00 OD2 I:ASP191 2.5 0.8 1.0 OE2 I:GLU195 2.7 0.7 1.0 OD1 I:ASP191 3.1 0.8 1.0 CG I:ASP191 3.2 0.8 1.0 HG J:SER254 3.9 0.2 1.0 CD I:GLU195 4.0 0.7 1.0 OG J:SER254 4.4 0.2 1.0 HB2 J:SER257 4.4 0.7 1.0 CB I:ASP191 4.7 0.8 1.0 OE1 I:GLU195 4.7 0.7 1.0 HG3 I:GLU195 4.9 0.7 1.0 HB3 I:ASP191 4.9 0.8 1.0 CG I:GLU195 5.0 0.7 1.0

Magnesium binding site 10 out of 12 in the 343 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 343 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg401 b:0.9 occ:1.00 OD2 J:ASP191 2.5 0.3 1.0 OE2 J:GLU195 2.7 0.7 1.0 OD1 J:ASP191 3.1 0.3 1.0 CG J:ASP191 3.2 0.3 1.0 HG I:SER254 3.8 1.0 1.0 CD J:GLU195 4.0 0.7 1.0 OG I:SER254 4.4 1.0 1.0 HB2 I:SER257 4.4 0.7 1.0 CB J:ASP191 4.7 0.3 1.0 OE1 J:GLU195 4.7 0.7 1.0 HG3 J:GLU195 4.9 0.7 1.0 HB3 J:ASP191 4.9 0.3 1.0 CG J:GLU195 5.0 0.7 1.0

C.Y.Chen, Y.C.Chang, B.L.Lin, C.H.Huang, M.D.Tsai. Temperature-Resolved Cryo-Em Uncovers Structural Bases of Temperature-Dependent Enzyme Functions. J.Am.Chem.Soc. V. 141 19983 2019.
ISSN: ESSN 1520-5126
PubMed: 31829582
DOI: 10.1021/JACS.9B10687