Magnesium in PDB 6kpj: 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Magnesium atom in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
(pdb code 6kpj). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 24 binding sites of Magnesium where determined in the
298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd, PDB code: 6kpj:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 1 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:0.7
occ:1.00
|
MG
|
A:MG404
|
1.2
|
0.8
|
1.0
|
OE2
|
A:GLU227
|
2.1
|
0.6
|
1.0
|
CD
|
A:GLU227
|
2.8
|
0.6
|
1.0
|
OE1
|
A:GLU227
|
2.8
|
0.6
|
1.0
|
O01
|
B:9TY404
|
3.0
|
0.6
|
1.0
|
OE1
|
A:GLU233
|
3.1
|
0.7
|
1.0
|
OD1
|
B:ASP191
|
3.4
|
0.8
|
1.0
|
O09
|
B:9TY404
|
3.5
|
0.6
|
1.0
|
HH11
|
B:ARG130
|
3.5
|
0.6
|
1.0
|
HG
|
B:SER194
|
3.5
|
0.5
|
1.0
|
OE2
|
A:GLU233
|
3.7
|
0.7
|
1.0
|
C02
|
B:9TY404
|
3.7
|
0.6
|
1.0
|
HH12
|
B:ARG130
|
3.7
|
0.6
|
1.0
|
HA
|
B:ASP191
|
3.7
|
0.8
|
1.0
|
CD
|
A:GLU233
|
3.8
|
0.7
|
1.0
|
NH1
|
B:ARG130
|
3.8
|
0.6
|
1.0
|
HB2
|
B:SER194
|
3.9
|
0.5
|
1.0
|
OG
|
B:SER194
|
4.1
|
0.5
|
1.0
|
CG
|
A:GLU227
|
4.2
|
0.6
|
1.0
|
HB3
|
B:SER194
|
4.3
|
0.5
|
1.0
|
CB
|
B:SER194
|
4.3
|
0.5
|
1.0
|
CG
|
B:ASP191
|
4.4
|
0.8
|
1.0
|
HD3
|
B:ARG130
|
4.4
|
0.6
|
1.0
|
HG3
|
A:GLU227
|
4.5
|
0.6
|
1.0
|
O
|
A:GLU227
|
4.5
|
0.6
|
1.0
|
HG2
|
A:GLU227
|
4.6
|
0.6
|
1.0
|
CA
|
B:ASP191
|
4.7
|
0.8
|
1.0
|
HA
|
A:GLU227
|
4.7
|
0.6
|
1.0
|
CZ
|
B:ARG130
|
4.9
|
0.6
|
1.0
|
O
|
B:ASP191
|
5.0
|
0.8
|
1.0
|
|
Magnesium binding site 2 out
of 24 in 6kpj
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Magnesium Binding Sites List in 6kpj
Magnesium binding site 2 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:0.8
occ:1.00
|
MG
|
A:MG401
|
1.2
|
0.7
|
1.0
|
O01
|
B:9TY404
|
2.2
|
0.6
|
1.0
|
O09
|
B:9TY404
|
2.3
|
0.6
|
1.0
|
C02
|
B:9TY404
|
2.6
|
0.6
|
1.0
|
OD1
|
B:ASP191
|
2.9
|
0.8
|
1.0
|
OE2
|
A:GLU227
|
3.1
|
0.6
|
1.0
|
OE2
|
A:GLU233
|
3.4
|
0.7
|
1.0
|
OE1
|
A:GLU233
|
3.5
|
0.7
|
1.0
|
HA
|
B:ASP191
|
3.7
|
0.8
|
1.0
|
CG
|
B:ASP191
|
3.8
|
0.8
|
1.0
|
CD
|
A:GLU227
|
3.9
|
0.6
|
1.0
|
HB2
|
B:SER194
|
3.9
|
0.5
|
1.0
|
CD
|
A:GLU233
|
3.9
|
0.7
|
1.0
|
OE1
|
A:GLU227
|
3.9
|
0.6
|
1.0
|
HH12
|
B:ARG130
|
3.9
|
0.6
|
1.0
|
MG
|
B:MG402
|
3.9
|
0.8
|
1.0
|
C03
|
B:9TY404
|
4.1
|
0.6
|
1.0
|
HH11
|
B:ARG130
|
4.1
|
0.6
|
1.0
|
HG
|
B:SER194
|
4.1
|
0.5
|
1.0
|
NH1
|
B:ARG130
|
4.3
|
0.6
|
1.0
|
OD2
|
B:ASP191
|
4.4
|
0.8
|
1.0
|
O
|
B:ASP191
|
4.4
|
0.8
|
1.0
|
HG3
|
B:GLU195
|
4.5
|
0.5
|
1.0
|
CA
|
B:ASP191
|
4.5
|
0.8
|
1.0
|
CB
|
B:SER194
|
4.5
|
0.5
|
1.0
|
H2
|
B:9TY404
|
4.6
|
0.6
|
1.0
|
H3
|
B:9TY404
|
4.6
|
0.6
|
1.0
|
HB3
|
B:SER194
|
4.6
|
0.5
|
1.0
|
OG
|
B:SER194
|
4.6
|
0.5
|
1.0
|
OE2
|
B:GLU195
|
4.6
|
0.5
|
1.0
|
CB
|
B:ASP191
|
4.7
|
0.8
|
1.0
|
C07
|
B:9TY404
|
4.9
|
0.6
|
1.0
|
C08
|
B:9TY404
|
4.9
|
0.6
|
1.0
|
HG2
|
B:GLU195
|
4.9
|
0.5
|
1.0
|
C
|
B:ASP191
|
5.0
|
0.8
|
1.0
|
|
Magnesium binding site 3 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 3 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:0.8
occ:1.00
|
OE2
|
B:GLU227
|
2.1
|
0.7
|
1.0
|
CD
|
B:GLU227
|
2.8
|
0.7
|
1.0
|
OE1
|
B:GLU227
|
2.8
|
0.7
|
1.0
|
O09
|
A:9TY403
|
2.8
|
0.1
|
1.0
|
OE1
|
B:GLU233
|
3.1
|
0.2
|
1.0
|
OD1
|
A:ASP191
|
3.3
|
0.1
|
1.0
|
O01
|
A:9TY403
|
3.4
|
0.1
|
1.0
|
HH11
|
A:ARG130
|
3.5
|
0.8
|
1.0
|
HG
|
A:SER194
|
3.5
|
0.1
|
1.0
|
C02
|
A:9TY403
|
3.5
|
0.1
|
1.0
|
OE2
|
B:GLU233
|
3.7
|
0.2
|
1.0
|
HH12
|
A:ARG130
|
3.7
|
0.8
|
1.0
|
HA
|
A:ASP191
|
3.7
|
0.1
|
1.0
|
CD
|
B:GLU233
|
3.8
|
0.2
|
1.0
|
NH1
|
A:ARG130
|
3.8
|
0.8
|
1.0
|
HB2
|
A:SER194
|
3.9
|
0.1
|
1.0
|
OG
|
A:SER194
|
4.1
|
0.1
|
1.0
|
CG
|
B:GLU227
|
4.2
|
0.7
|
1.0
|
HB3
|
A:SER194
|
4.3
|
0.1
|
1.0
|
CB
|
A:SER194
|
4.3
|
0.1
|
1.0
|
CG
|
A:ASP191
|
4.3
|
0.1
|
1.0
|
HD3
|
A:ARG130
|
4.5
|
0.8
|
1.0
|
HG3
|
B:GLU227
|
4.5
|
0.7
|
1.0
|
O
|
B:GLU227
|
4.5
|
0.7
|
1.0
|
HG2
|
B:GLU227
|
4.6
|
0.7
|
1.0
|
CA
|
A:ASP191
|
4.6
|
0.1
|
1.0
|
HA
|
B:GLU227
|
4.7
|
0.7
|
1.0
|
O
|
A:ASP191
|
4.9
|
0.1
|
1.0
|
CZ
|
A:ARG130
|
4.9
|
0.8
|
1.0
|
|
Magnesium binding site 4 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 4 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:0.8
occ:1.00
|
O05
|
B:9TY404
|
1.8
|
0.6
|
1.0
|
OE2
|
B:GLU195
|
1.9
|
0.5
|
1.0
|
O09
|
B:9TY404
|
1.9
|
0.6
|
1.0
|
OD2
|
B:ASP191
|
2.0
|
0.8
|
1.0
|
C02
|
B:9TY404
|
2.2
|
0.6
|
1.0
|
C04
|
B:9TY404
|
2.2
|
0.6
|
1.0
|
C03
|
B:9TY404
|
2.3
|
0.6
|
1.0
|
CG
|
B:ASP191
|
2.8
|
0.8
|
1.0
|
CD
|
B:GLU195
|
3.1
|
0.5
|
1.0
|
C08
|
B:9TY404
|
3.1
|
0.6
|
1.0
|
OD1
|
B:ASP191
|
3.1
|
0.8
|
1.0
|
O01
|
B:9TY404
|
3.3
|
0.6
|
1.0
|
O06
|
B:9TY404
|
3.4
|
0.6
|
1.0
|
H3
|
B:9TY404
|
3.4
|
0.6
|
1.0
|
H4
|
B:9TY404
|
3.4
|
0.6
|
1.0
|
O
|
B:ASP191
|
3.7
|
0.8
|
1.0
|
C07
|
B:9TY404
|
3.8
|
0.6
|
1.0
|
MG
|
A:MG404
|
3.9
|
0.8
|
1.0
|
OE1
|
B:GLU195
|
3.9
|
0.5
|
1.0
|
HG3
|
B:GLU195
|
4.0
|
0.5
|
1.0
|
HB2
|
A:SER257
|
4.0
|
0.6
|
1.0
|
CG
|
B:GLU195
|
4.0
|
0.5
|
1.0
|
CB
|
B:ASP191
|
4.1
|
0.8
|
1.0
|
HG2
|
B:GLU195
|
4.2
|
0.5
|
1.0
|
HB3
|
B:ASP191
|
4.2
|
0.8
|
1.0
|
H2
|
B:9TY404
|
4.3
|
0.6
|
1.0
|
H1
|
B:9TY404
|
4.3
|
0.6
|
1.0
|
C
|
B:ASP191
|
4.4
|
0.8
|
1.0
|
HA
|
B:ASP191
|
4.6
|
0.8
|
1.0
|
CA
|
B:ASP191
|
4.6
|
0.8
|
1.0
|
HD23
|
B:LEU192
|
4.7
|
0.5
|
1.0
|
OG
|
A:SER254
|
4.8
|
0.4
|
1.0
|
HB2
|
B:ASP191
|
4.8
|
0.8
|
1.0
|
CB
|
A:SER257
|
5.0
|
0.6
|
1.0
|
HG
|
A:SER254
|
5.0
|
0.4
|
1.0
|
|
Magnesium binding site 5 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 5 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg401
b:0.8
occ:1.00
|
MG
|
C:MG404
|
1.2
|
0.9
|
1.0
|
OE2
|
C:GLU227
|
2.1
|
0.6
|
1.0
|
CD
|
C:GLU227
|
2.8
|
0.6
|
1.0
|
OE1
|
C:GLU227
|
2.8
|
0.6
|
1.0
|
O09
|
D:9TY404
|
2.8
|
0.0
|
1.0
|
OE1
|
C:GLU233
|
3.1
|
0.8
|
1.0
|
O01
|
D:9TY404
|
3.3
|
0.0
|
1.0
|
OD1
|
D:ASP191
|
3.4
|
0.8
|
1.0
|
C02
|
D:9TY404
|
3.5
|
0.0
|
1.0
|
HH11
|
D:ARG130
|
3.5
|
0.3
|
1.0
|
HG
|
D:SER194
|
3.5
|
0.4
|
1.0
|
OE2
|
C:GLU233
|
3.7
|
0.8
|
1.0
|
CD
|
C:GLU233
|
3.8
|
0.8
|
1.0
|
HH12
|
D:ARG130
|
3.8
|
0.3
|
1.0
|
HA
|
D:ASP191
|
3.8
|
0.8
|
1.0
|
HB2
|
D:SER194
|
3.9
|
0.4
|
1.0
|
NH1
|
D:ARG130
|
3.9
|
0.3
|
1.0
|
OG
|
D:SER194
|
4.2
|
0.4
|
1.0
|
CG
|
C:GLU227
|
4.2
|
0.6
|
1.0
|
HB3
|
D:SER194
|
4.3
|
0.4
|
1.0
|
CB
|
D:SER194
|
4.3
|
0.4
|
1.0
|
CG
|
D:ASP191
|
4.4
|
0.8
|
1.0
|
HD3
|
D:ARG130
|
4.5
|
0.3
|
1.0
|
HG3
|
C:GLU227
|
4.5
|
0.6
|
1.0
|
O
|
C:GLU227
|
4.5
|
0.6
|
1.0
|
HG2
|
C:GLU227
|
4.6
|
0.6
|
1.0
|
HA
|
C:GLU227
|
4.7
|
0.6
|
1.0
|
CA
|
D:ASP191
|
4.7
|
0.8
|
1.0
|
MG
|
D:MG402
|
4.9
|
0.6
|
1.0
|
O
|
D:ASP191
|
5.0
|
0.8
|
1.0
|
CZ
|
D:ARG130
|
5.0
|
0.3
|
1.0
|
|
Magnesium binding site 6 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 6 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg404
b:0.9
occ:1.00
|
MG
|
C:MG401
|
1.2
|
0.8
|
1.0
|
O01
|
D:9TY404
|
2.1
|
0.0
|
1.0
|
O09
|
D:9TY404
|
2.2
|
0.0
|
1.0
|
C02
|
D:9TY404
|
2.5
|
0.0
|
1.0
|
OD1
|
D:ASP191
|
2.7
|
0.8
|
1.0
|
OE2
|
C:GLU227
|
2.9
|
0.6
|
1.0
|
HA
|
D:ASP191
|
3.4
|
0.8
|
1.0
|
CG
|
D:ASP191
|
3.6
|
0.8
|
1.0
|
CD
|
C:GLU227
|
3.7
|
0.6
|
1.0
|
OE1
|
C:GLU227
|
3.7
|
0.6
|
1.0
|
HB2
|
D:SER194
|
3.7
|
0.4
|
1.0
|
MG
|
D:MG402
|
3.7
|
0.6
|
1.0
|
OE2
|
C:GLU233
|
3.8
|
0.8
|
1.0
|
HH12
|
D:ARG130
|
3.8
|
0.3
|
1.0
|
OE1
|
C:GLU233
|
3.8
|
0.8
|
1.0
|
C03
|
D:9TY404
|
4.0
|
0.0
|
1.0
|
HG
|
D:SER194
|
4.0
|
0.4
|
1.0
|
HH11
|
D:ARG130
|
4.0
|
0.3
|
1.0
|
O
|
D:ASP191
|
4.1
|
0.8
|
1.0
|
NH1
|
D:ARG130
|
4.2
|
0.3
|
1.0
|
OD2
|
D:ASP191
|
4.2
|
0.8
|
1.0
|
CA
|
D:ASP191
|
4.2
|
0.8
|
1.0
|
CD
|
C:GLU233
|
4.2
|
0.8
|
1.0
|
HG3
|
D:GLU195
|
4.3
|
0.2
|
1.0
|
CB
|
D:SER194
|
4.4
|
0.4
|
1.0
|
OG
|
D:SER194
|
4.4
|
0.4
|
1.0
|
CB
|
D:ASP191
|
4.5
|
0.8
|
1.0
|
OE2
|
D:GLU195
|
4.5
|
0.2
|
1.0
|
HB3
|
D:SER194
|
4.5
|
0.4
|
1.0
|
H3
|
D:9TY404
|
4.6
|
0.0
|
1.0
|
H2
|
D:9TY404
|
4.7
|
0.0
|
1.0
|
C
|
D:ASP191
|
4.7
|
0.8
|
1.0
|
HB2
|
D:ASP191
|
4.8
|
0.8
|
1.0
|
HG2
|
D:GLU195
|
4.9
|
0.2
|
1.0
|
C08
|
D:9TY404
|
4.9
|
0.0
|
1.0
|
C07
|
D:9TY404
|
4.9
|
0.0
|
1.0
|
C04
|
D:9TY404
|
4.9
|
0.0
|
1.0
|
CG
|
D:GLU195
|
5.0
|
0.2
|
1.0
|
|
Magnesium binding site 7 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 7 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg401
b:0.0
occ:1.00
|
OE2
|
D:GLU227
|
2.1
|
0.6
|
1.0
|
CD
|
D:GLU227
|
2.8
|
0.6
|
1.0
|
OE1
|
D:GLU227
|
2.8
|
0.6
|
1.0
|
OE1
|
D:GLU233
|
3.1
|
0.5
|
1.0
|
O09
|
C:9TY403
|
3.1
|
0.9
|
1.0
|
HG
|
C:SER194
|
3.4
|
0.3
|
1.0
|
OD1
|
C:ASP191
|
3.4
|
0.7
|
1.0
|
HH11
|
C:ARG130
|
3.5
|
0.7
|
1.0
|
O01
|
C:9TY403
|
3.5
|
0.9
|
1.0
|
OE2
|
D:GLU233
|
3.7
|
0.5
|
1.0
|
HH12
|
C:ARG130
|
3.7
|
0.7
|
1.0
|
HA
|
C:ASP191
|
3.7
|
0.7
|
1.0
|
C02
|
C:9TY403
|
3.7
|
0.9
|
1.0
|
CD
|
D:GLU233
|
3.8
|
0.5
|
1.0
|
HB2
|
C:SER194
|
3.8
|
0.3
|
1.0
|
NH1
|
C:ARG130
|
3.9
|
0.7
|
1.0
|
OG
|
C:SER194
|
4.1
|
0.3
|
1.0
|
HB3
|
C:SER194
|
4.2
|
0.3
|
1.0
|
CG
|
D:GLU227
|
4.2
|
0.6
|
1.0
|
CB
|
C:SER194
|
4.3
|
0.3
|
1.0
|
HD3
|
C:ARG130
|
4.4
|
0.7
|
1.0
|
CG
|
C:ASP191
|
4.4
|
0.7
|
1.0
|
HG3
|
D:GLU227
|
4.5
|
0.6
|
1.0
|
O
|
D:GLU227
|
4.5
|
0.6
|
1.0
|
HG2
|
D:GLU227
|
4.6
|
0.6
|
1.0
|
CA
|
C:ASP191
|
4.7
|
0.7
|
1.0
|
HA
|
D:GLU227
|
4.7
|
0.6
|
1.0
|
CZ
|
C:ARG130
|
5.0
|
0.7
|
1.0
|
O
|
C:ASP191
|
5.0
|
0.7
|
1.0
|
|
Magnesium binding site 8 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 8 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:0.6
occ:1.00
|
OE2
|
D:GLU195
|
1.9
|
0.2
|
1.0
|
O06
|
D:9TY404
|
1.9
|
0.0
|
1.0
|
O01
|
D:9TY404
|
1.9
|
0.0
|
1.0
|
OD2
|
D:ASP191
|
1.9
|
0.8
|
1.0
|
C04
|
D:9TY404
|
2.2
|
0.0
|
1.0
|
C02
|
D:9TY404
|
2.2
|
0.0
|
1.0
|
C03
|
D:9TY404
|
2.3
|
0.0
|
1.0
|
CG
|
D:ASP191
|
2.7
|
0.8
|
1.0
|
OD1
|
D:ASP191
|
3.1
|
0.8
|
1.0
|
CD
|
D:GLU195
|
3.1
|
0.2
|
1.0
|
C08
|
D:9TY404
|
3.1
|
0.0
|
1.0
|
O05
|
D:9TY404
|
3.3
|
0.0
|
1.0
|
O09
|
D:9TY404
|
3.3
|
0.0
|
1.0
|
H4
|
D:9TY404
|
3.4
|
0.0
|
1.0
|
H3
|
D:9TY404
|
3.4
|
0.0
|
1.0
|
O
|
D:ASP191
|
3.6
|
0.8
|
1.0
|
MG
|
C:MG404
|
3.7
|
0.9
|
1.0
|
C07
|
D:9TY404
|
3.8
|
0.0
|
1.0
|
HG3
|
D:GLU195
|
3.9
|
0.2
|
1.0
|
OE1
|
D:GLU195
|
3.9
|
0.2
|
1.0
|
CG
|
D:GLU195
|
4.0
|
0.2
|
1.0
|
CB
|
D:ASP191
|
4.0
|
0.8
|
1.0
|
HG2
|
D:GLU195
|
4.1
|
0.2
|
1.0
|
HB3
|
D:ASP191
|
4.2
|
0.8
|
1.0
|
HB2
|
C:SER257
|
4.2
|
0.6
|
1.0
|
H1
|
D:9TY404
|
4.3
|
0.0
|
1.0
|
H2
|
D:9TY404
|
4.3
|
0.0
|
1.0
|
C
|
D:ASP191
|
4.4
|
0.8
|
1.0
|
HA
|
D:ASP191
|
4.5
|
0.8
|
1.0
|
CA
|
D:ASP191
|
4.6
|
0.8
|
1.0
|
HD23
|
D:LEU192
|
4.7
|
0.5
|
1.0
|
HB2
|
D:ASP191
|
4.7
|
0.8
|
1.0
|
MG
|
C:MG401
|
4.9
|
0.8
|
1.0
|
OG
|
C:SER254
|
5.0
|
0.6
|
1.0
|
|
Magnesium binding site 9 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 9 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg401
b:0.0
occ:1.00
|
MG
|
E:MG404
|
1.3
|
0.7
|
1.0
|
OE2
|
E:GLU227
|
2.1
|
0.7
|
1.0
|
CD
|
E:GLU227
|
2.8
|
0.7
|
1.0
|
OE1
|
E:GLU227
|
2.8
|
0.7
|
1.0
|
O09
|
F:9TY404
|
3.0
|
0.1
|
1.0
|
OE1
|
E:GLU233
|
3.1
|
0.1
|
1.0
|
OD1
|
F:ASP191
|
3.2
|
0.5
|
1.0
|
HH11
|
F:ARG130
|
3.3
|
0.6
|
1.0
|
HG
|
F:SER194
|
3.4
|
0.8
|
1.0
|
HH12
|
F:ARG130
|
3.5
|
0.6
|
1.0
|
O01
|
F:9TY404
|
3.6
|
0.1
|
1.0
|
HA
|
F:ASP191
|
3.6
|
0.5
|
1.0
|
NH1
|
F:ARG130
|
3.7
|
0.6
|
1.0
|
OE2
|
E:GLU233
|
3.7
|
0.1
|
1.0
|
C02
|
F:9TY404
|
3.7
|
0.1
|
1.0
|
CD
|
E:GLU233
|
3.8
|
0.1
|
1.0
|
HB2
|
F:SER194
|
3.8
|
0.8
|
1.0
|
OG
|
F:SER194
|
4.1
|
0.8
|
1.0
|
CG
|
E:GLU227
|
4.2
|
0.7
|
1.0
|
CG
|
F:ASP191
|
4.2
|
0.5
|
1.0
|
HD3
|
F:ARG130
|
4.3
|
0.6
|
1.0
|
CB
|
F:SER194
|
4.3
|
0.8
|
1.0
|
HG3
|
E:GLU227
|
4.5
|
0.7
|
1.0
|
CA
|
F:ASP191
|
4.5
|
0.5
|
1.0
|
O
|
E:GLU227
|
4.5
|
0.7
|
1.0
|
HG2
|
E:GLU227
|
4.5
|
0.7
|
1.0
|
HA
|
E:GLU227
|
4.7
|
0.7
|
1.0
|
HB3
|
F:SER194
|
4.7
|
0.8
|
1.0
|
CZ
|
F:ARG130
|
4.8
|
0.6
|
1.0
|
CB
|
F:ASP191
|
4.9
|
0.5
|
1.0
|
O
|
F:ASP191
|
4.9
|
0.5
|
1.0
|
|
Magnesium binding site 10 out
of 24 in 6kpj
Go back to
Magnesium Binding Sites List in 6kpj
Magnesium binding site 10 out
of 24 in the 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of 298 K Cryoem Structure of Sso-Kari in Complex with MG2+, Nadh and Cpd within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg404
b:0.7
occ:1.00
|
MG
|
E:MG401
|
1.3
|
0.0
|
1.0
|
O09
|
F:9TY404
|
2.1
|
0.1
|
1.0
|
O01
|
F:9TY404
|
2.4
|
0.1
|
1.0
|
C02
|
F:9TY404
|
2.6
|
0.1
|
1.0
|
OD1
|
F:ASP191
|
2.9
|
0.5
|
1.0
|
OE2
|
E:GLU233
|
3.1
|
0.1
|
1.0
|
OE2
|
E:GLU227
|
3.2
|
0.7
|
1.0
|
OE1
|
E:GLU233
|
3.3
|
0.1
|
1.0
|
CD
|
E:GLU233
|
3.6
|
0.1
|
1.0
|
HA
|
F:ASP191
|
3.8
|
0.5
|
1.0
|
CG
|
F:ASP191
|
3.9
|
0.5
|
1.0
|
HH12
|
F:ARG130
|
3.9
|
0.6
|
1.0
|
HB2
|
F:SER194
|
3.9
|
0.8
|
1.0
|
CD
|
E:GLU227
|
4.0
|
0.7
|
1.0
|
OE1
|
E:GLU227
|
4.0
|
0.7
|
1.0
|
MG
|
F:MG402
|
4.1
|
0.5
|
1.0
|
HG
|
F:SER194
|
4.1
|
0.8
|
1.0
|
HH11
|
F:ARG130
|
4.1
|
0.6
|
1.0
|
C03
|
F:9TY404
|
4.1
|
0.1
|
1.0
|
NH1
|
F:ARG130
|
4.2
|
0.6
|
1.0
|
OD2
|
F:ASP191
|
4.4
|
0.5
|
1.0
|
O
|
F:ASP191
|
4.5
|
0.5
|
1.0
|
HG3
|
F:GLU195
|
4.6
|
0.8
|
1.0
|
H2
|
F:9TY404
|
4.6
|
0.1
|
1.0
|
CA
|
F:ASP191
|
4.6
|
0.5
|
1.0
|
CB
|
F:SER194
|
4.6
|
0.8
|
1.0
|
H3
|
F:9TY404
|
4.7
|
0.1
|
1.0
|
OG
|
F:SER194
|
4.7
|
0.8
|
1.0
|
OE2
|
F:GLU195
|
4.7
|
0.8
|
1.0
|
CB
|
F:ASP191
|
4.8
|
0.5
|
1.0
|
C07
|
F:9TY404
|
4.9
|
0.1
|
1.0
|
C08
|
F:9TY404
|
5.0
|
0.1
|
1.0
|
|
Reference:
C.Y.Chen,
Y.C.Chang,
B.L.Lin,
C.H.Huang,
M.D.Tsai.
Temperature-Resolved Cryo-Em Uncovers Structural Bases of Temperature-Dependent Enzyme Functions. J.Am.Chem.Soc. V. 141 19983 2019.
ISSN: ESSN 1520-5126
PubMed: 31829582
DOI: 10.1021/JACS.9B10687
Page generated: Tue Oct 1 07:20:16 2024
|