Magnesium in PDB 6kpk: 309 K Cryoem Structure of Sso-Kari in Complex with MG2+

Magnesium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Magnesium atom in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ (pdb code 6kpk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 24 binding sites of Magnesium where determined in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+, PDB code: 6kpk:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 24 in 6kpk

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Magnesium binding site 1 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:88.4
occ:1.00
OD2 A:ASP191 2.8 85.4 1.0
OE2 A:GLU195 2.9 79.2 1.0
OD1 A:ASP191 2.9 85.4 1.0
CG A:ASP191 3.2 85.4 1.0
HG B:SER254 3.8 84.8 1.0
CD A:GLU195 4.1 79.2 1.0
HB2 B:SER257 4.3 79.3 1.0
OG B:SER254 4.3 84.8 1.0
CB A:ASP191 4.6 85.4 1.0
OE1 A:GLU195 4.7 79.2 1.0
HB3 A:ASP191 4.8 85.4 1.0
O A:ASP191 4.9 85.4 1.0

Magnesium binding site 2 out of 24 in 6kpk

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Magnesium binding site 2 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:89.9
occ:1.00
OE2 A:GLU227 2.3 92.5 1.0
OD1 B:ASP191 3.3 85.1 1.0
CD A:GLU227 3.4 92.5 1.0
HA B:ASP191 3.5 85.1 1.0
HG B:SER194 3.9 80.2 1.0
OE1 A:GLU227 3.9 92.5 1.0
HB2 B:SER194 4.0 80.2 1.0
HG3 A:GLU233 4.2 0.4 1.0
CG B:ASP191 4.3 85.1 1.0
O B:ASP191 4.3 85.1 1.0
CA B:ASP191 4.4 85.1 1.0
HG3 A:GLU227 4.5 92.5 1.0
OG B:SER194 4.6 80.2 1.0
CG A:GLU227 4.6 92.5 1.0
CB B:SER194 4.6 80.2 1.0
HG3 B:GLU195 4.7 79.0 1.0
HB3 B:SER194 4.7 80.2 1.0
HG2 A:GLU233 4.8 0.4 1.0
C B:ASP191 4.8 85.1 1.0
CB B:ASP191 4.9 85.1 1.0
CG A:GLU233 5.0 0.4 1.0
OE2 B:GLU195 5.0 79.0 1.0

Magnesium binding site 3 out of 24 in 6kpk

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Magnesium binding site 3 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:89.8
occ:1.00
OE2 B:GLU227 2.2 92.8 1.0
OD1 A:ASP191 3.3 85.4 1.0
CD B:GLU227 3.4 92.8 1.0
HA A:ASP191 3.5 85.4 1.0
HG A:SER194 3.9 80.6 1.0
OE1 B:GLU227 3.9 92.8 1.0
HB2 A:SER194 4.0 80.6 1.0
HG3 B:GLU233 4.1 0.9 1.0
CG A:ASP191 4.3 85.4 1.0
O A:ASP191 4.3 85.4 1.0
CA A:ASP191 4.4 85.4 1.0
HG3 B:GLU227 4.5 92.8 1.0
OG A:SER194 4.6 80.6 1.0
CG B:GLU227 4.6 92.8 1.0
CB A:SER194 4.6 80.6 1.0
HG3 A:GLU195 4.7 79.2 1.0
HB3 A:SER194 4.7 80.6 1.0
C A:ASP191 4.8 85.4 1.0
CB A:ASP191 4.9 85.4 1.0
HG2 B:GLU233 4.9 0.9 1.0
CG B:GLU233 5.0 0.9 1.0
OE2 A:GLU195 5.0 79.2 1.0
O B:GLU227 5.0 92.8 1.0

Magnesium binding site 4 out of 24 in 6kpk

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Magnesium binding site 4 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:87.0
occ:1.00
OD2 B:ASP191 2.8 85.1 1.0
OE2 B:GLU195 2.9 79.0 1.0
OD1 B:ASP191 2.9 85.1 1.0
CG B:ASP191 3.2 85.1 1.0
HG A:SER254 3.8 84.2 1.0
CD B:GLU195 4.1 79.0 1.0
HB2 A:SER257 4.2 79.0 1.0
OG A:SER254 4.3 84.2 1.0
CB B:ASP191 4.6 85.1 1.0
OE1 B:GLU195 4.7 79.0 1.0
HB3 B:ASP191 4.8 85.1 1.0
O B:ASP191 4.9 85.1 1.0

Magnesium binding site 5 out of 24 in 6kpk

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Magnesium binding site 5 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:89.3
occ:1.00
OD2 C:ASP191 2.8 85.4 1.0
OE2 C:GLU195 2.9 79.3 1.0
OD1 C:ASP191 2.9 85.4 1.0
CG C:ASP191 3.2 85.4 1.0
HG D:SER254 3.7 85.1 1.0
CD C:GLU195 4.1 79.3 1.0
HB2 D:SER257 4.2 79.8 1.0
OG D:SER254 4.2 85.1 1.0
CB C:ASP191 4.6 85.4 1.0
OE1 C:GLU195 4.7 79.3 1.0
HB3 C:ASP191 4.8 85.4 1.0
O C:ASP191 4.9 85.4 1.0

Magnesium binding site 6 out of 24 in 6kpk

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Magnesium binding site 6 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:90.5
occ:1.00
OE2 D:GLU227 2.4 92.5 1.0
OD1 C:ASP191 3.3 85.4 1.0
HA C:ASP191 3.5 85.4 1.0
CD D:GLU227 3.5 92.5 1.0
HG C:SER194 3.9 80.5 1.0
HB2 C:SER194 4.0 80.5 1.0
OE1 D:GLU227 4.0 92.5 1.0
HG3 D:GLU233 4.2 0.1 1.0
CG C:ASP191 4.3 85.4 1.0
O C:ASP191 4.3 85.4 1.0
CA C:ASP191 4.4 85.4 1.0
OG C:SER194 4.6 80.5 1.0
CB C:SER194 4.6 80.5 1.0
HG3 D:GLU227 4.6 92.5 1.0
HG3 C:GLU195 4.7 79.3 1.0
HG2 D:GLU233 4.7 0.1 1.0
CG D:GLU227 4.7 92.5 1.0
HB3 C:SER194 4.7 80.5 1.0
C C:ASP191 4.8 85.4 1.0
CB C:ASP191 4.9 85.4 1.0
CG D:GLU233 4.9 0.1 1.0
OE2 C:GLU195 5.0 79.3 1.0

Magnesium binding site 7 out of 24 in 6kpk

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Magnesium binding site 7 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg403

b:89.9
occ:1.00
OE2 C:GLU227 2.1 93.6 1.0
CD C:GLU227 3.3 93.6 1.0
OD1 D:ASP191 3.3 85.6 1.0
HA D:ASP191 3.5 85.6 1.0
OE1 C:GLU227 3.8 93.6 1.0
HG D:SER194 3.9 80.8 1.0
HB2 D:SER194 4.0 80.8 1.0
HG2 C:GLU233 4.2 0.8 1.0
CG D:ASP191 4.3 85.6 1.0
O D:ASP191 4.3 85.6 1.0
CA D:ASP191 4.4 85.6 1.0
HG3 C:GLU227 4.4 93.6 1.0
CG C:GLU227 4.5 93.6 1.0
OG D:SER194 4.6 80.8 1.0
CB D:SER194 4.6 80.8 1.0
HG3 C:GLU233 4.7 0.8 1.0
HG3 D:GLU195 4.7 79.5 1.0
HB3 D:SER194 4.7 80.8 1.0
C D:ASP191 4.8 85.6 1.0
HG2 C:GLU227 4.9 93.6 1.0
CB D:ASP191 4.9 85.6 1.0
O C:GLU227 4.9 93.6 1.0
OE2 D:GLU195 5.0 79.5 1.0
CG C:GLU233 5.0 0.8 1.0

Magnesium binding site 8 out of 24 in 6kpk

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Magnesium binding site 8 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:87.8
occ:1.00
OD2 D:ASP191 2.8 85.6 1.0
OE2 D:GLU195 2.9 79.5 1.0
OD1 D:ASP191 2.9 85.6 1.0
CG D:ASP191 3.2 85.6 1.0
HG C:SER254 3.9 84.5 1.0
CD D:GLU195 4.1 79.5 1.0
HB2 C:SER257 4.4 79.4 1.0
OG C:SER254 4.5 84.5 1.0
CB D:ASP191 4.6 85.6 1.0
OE1 D:GLU195 4.7 79.5 1.0
HB3 D:ASP191 4.8 85.6 1.0
O D:ASP191 4.9 85.6 1.0

Magnesium binding site 9 out of 24 in 6kpk

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Magnesium binding site 9 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:88.8
occ:1.00
OD2 E:ASP191 2.8 85.5 1.0
OE2 E:GLU195 2.9 79.1 1.0
OD1 E:ASP191 2.9 85.5 1.0
CG E:ASP191 3.2 85.5 1.0
HG F:SER254 3.9 84.1 1.0
CD E:GLU195 4.1 79.1 1.0
HB2 F:SER257 4.4 79.0 1.0
OG F:SER254 4.4 84.1 1.0
CB E:ASP191 4.6 85.5 1.0
OE1 E:GLU195 4.7 79.1 1.0
HB3 E:ASP191 4.8 85.5 1.0
O E:ASP191 4.9 85.5 1.0

Magnesium binding site 10 out of 24 in 6kpk

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Magnesium binding site 10 out of 24 in the 309 K Cryoem Structure of Sso-Kari in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 309 K Cryoem Structure of Sso-Kari in Complex with MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:89.8
occ:1.00
OE2 E:GLU227 2.3 92.6 1.0
OD1 F:ASP191 3.3 85.2 1.0
CD E:GLU227 3.5 92.6 1.0
HA F:ASP191 3.5 85.2 1.0
HG F:SER194 3.9 80.4 1.0
OE1 E:GLU227 4.0 92.6 1.0
HB2 F:SER194 4.0 80.4 1.0
HG3 E:GLU233 4.2 0.5 1.0
CG F:ASP191 4.3 85.2 1.0
O F:ASP191 4.3 85.2 1.0
CA F:ASP191 4.4 85.2 1.0
OG F:SER194 4.6 80.4 1.0
HG3 E:GLU227 4.6 92.6 1.0
CB F:SER194 4.6 80.4 1.0
HG3 F:GLU195 4.7 79.2 1.0
CG E:GLU227 4.7 92.6 1.0
HG2 E:GLU233 4.7 0.5 1.0
HB3 F:SER194 4.7 80.4 1.0
C F:ASP191 4.8 85.2 1.0
CB F:ASP191 4.9 85.2 1.0
CG E:GLU233 4.9 0.5 1.0
OE2 F:GLU195 5.0 79.2 1.0

Reference:

C.Y.Chen, Y.C.Chang, B.L.Lin, C.H.Huang, M.D.Tsai. Temperature-Resolved Cryo-Em Uncovers Structural Bases of Temperature-Dependent Enzyme Functions. J.Am.Chem.Soc. V. 141 19983 2019.
ISSN: ESSN 1520-5126
PubMed: 31829582
DOI: 10.1021/JACS.9B10687
Page generated: Mon Dec 14 23:07:48 2020

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