Magnesium in PDB 6ks6: Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1

The structure of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 also contains other interesting chemical elements:

Fluorine	(F)	42 atoms
Aluminium	(Al)	14 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 (pdb code 6ks6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1, PDB code: 6ks6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg602 b:78.9 occ:1.00 O3A a:ADP601 2.2 0.8 1.0 O1B a:ADP601 2.2 0.1 1.0 OD1 a:ASP96 2.4 99.4 1.0 O2A a:ADP601 2.5 0.0 1.0 PA a:ADP601 2.6 0.3 1.0 PB a:ADP601 2.7 0.6 1.0 OD2 a:ASP96 2.9 99.4 1.0 CG a:ASP96 3.0 99.4 1.0 O1A a:ADP601 3.1 0.2 1.0 F1 a:AF3603 3.4 58.2 1.0 O3B a:ADP601 3.5 0.5 1.0 AL a:AF3603 3.6 55.7 1.0 O2B a:ADP601 4.0 0.6 1.0 O5' a:ADP601 4.1 0.4 1.0 F2 a:AF3603 4.3 47.6 1.0 F3 a:AF3603 4.3 62.6 1.0 O a:SER163 4.5 99.2 1.0 CB a:ASP96 4.5 99.4 1.0 N a:GLY97 4.6 94.7 1.0 CA a:SER163 4.8 99.2 1.0 OG a:SER166 4.9 98.5 1.0 C5' a:ADP601 5.0 0.2 1.0

Magnesium binding site 2 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:78.9 occ:1.00 O3A A:ADP601 2.2 0.8 1.0 O1A A:ADP601 2.5 0.0 1.0 PA A:ADP601 2.9 0.3 1.0 PB A:ADP601 3.2 0.6 1.0 OD1 A:ASP96 3.2 99.8 1.0 O1B A:ADP601 3.4 0.1 1.0 O3B A:ADP601 3.4 0.5 1.0 NZ A:LYS167 3.4 98.0 1.0 F1 A:AF3603 3.5 58.2 1.0 O2A A:ADP601 3.9 0.2 1.0 AL A:AF3603 4.0 55.7 1.0 O5' A:ADP601 4.0 0.4 1.0 O A:SER163 4.2 98.8 1.0 F2 A:AF3603 4.4 47.6 1.0 CA A:SER163 4.4 98.8 1.0 CG A:ASP96 4.4 99.8 1.0 O2B A:ADP601 4.5 0.6 1.0 CB A:SER163 4.7 98.8 1.0 C A:SER163 4.8 98.8 1.0 OG A:SER166 4.8 96.7 1.0 CE A:LYS167 4.9 98.0 1.0 F3 A:AF3603 4.9 62.6 1.0

Magnesium binding site 3 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ b:Mg602 b:78.9 occ:1.00 OD1 b:ASP90 2.2 89.7 1.0 O1B b:ADP601 2.2 61.5 1.0 O2A b:ADP601 2.5 0.0 1.0 PA b:ADP601 2.5 10.3 1.0 O1A b:ADP601 2.5 77.2 1.0 O3A b:ADP601 2.6 2.8 1.0 F1 b:AF3603 2.8 58.2 1.0 PB b:ADP601 3.0 89.6 1.0 CG b:ASP90 3.2 89.7 1.0 AL b:AF3603 3.3 55.7 1.0 F3 b:AF3603 3.5 62.6 1.0 OD2 b:ASP90 3.6 89.7 1.0 N b:GLY91 3.9 86.2 1.0 NZ b:LYS164 3.9 92.5 1.0 O3B b:ADP601 3.9 79.6 1.0 OG b:SER163 4.1 92.4 1.0 O5' b:ADP601 4.1 84.4 1.0 O2B b:ADP601 4.1 94.1 1.0 F2 b:AF3603 4.2 47.6 1.0 CB b:ASP90 4.4 89.7 1.0 CG2 b:THR160 4.6 89.7 1.0 CA b:ASP90 4.6 87.7 1.0 CA b:GLY91 4.6 86.2 1.0 O b:THR160 4.6 89.7 1.0 C b:ASP90 4.7 87.7 1.0 C5' b:ADP601 5.0 39.2 1.0

Magnesium binding site 4 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:78.9 occ:1.00 O2A B:ADP601 2.3 0.2 1.0 O2B B:ADP601 2.3 0.1 1.0 OD1 B:ASP90 2.6 89.4 1.0 F1 B:AF3603 3.1 58.2 1.0 OD2 B:ASP90 3.1 89.4 1.0 CG B:ASP90 3.2 89.4 1.0 PB B:ADP601 3.4 0.6 1.0 PA B:ADP601 3.6 0.3 1.0 OG B:SER163 3.6 89.8 1.0 O1B B:ADP601 3.7 0.6 1.0 AL B:AF3603 3.8 55.7 1.0 O3A B:ADP601 3.8 0.8 1.0 NZ B:LYS164 4.1 89.6 1.0 CG2 B:THR160 4.3 88.2 1.0 F2 B:AF3603 4.4 47.6 1.0 O B:THR160 4.4 87.8 1.0 N B:GLY91 4.5 85.1 1.0 O1A B:ADP601 4.5 0.0 1.0 CB B:SER163 4.6 89.8 1.0 CA B:THR160 4.6 87.8 1.0 O5' B:ADP601 4.7 0.4 1.0 CB B:ASP90 4.7 89.4 1.0 O3B B:ADP601 4.7 0.5 1.0 F3 B:AF3603 4.8 62.6 1.0 CB B:THR160 5.0 88.2 1.0

Magnesium binding site 5 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ d:Mg602 b:78.9 occ:1.00 O1B d:ADP601 2.1 0.6 1.0 O2A d:ADP601 2.2 0.0 1.0 O d:SER157 2.7 99.7 1.0 OD1 d:ASP91 2.7 95.9 1.0 PB d:ADP601 3.1 0.6 1.0 O2B d:ADP601 3.3 0.1 1.0 PA d:ADP601 3.4 0.3 1.0 CG d:ASP91 3.5 95.9 1.0 O3A d:ADP601 3.6 0.8 1.0 OD2 d:ASP91 3.7 95.9 1.0 C d:SER157 3.8 99.7 1.0 OG d:SER157 3.9 99.9 1.0 O5' d:ADP601 4.0 0.4 1.0 F1 d:AF3603 4.1 58.2 1.0 AL d:AF3603 4.3 55.7 1.0 F2 d:AF3603 4.3 47.6 1.0 CA d:SER157 4.4 99.7 1.0 O3B d:ADP601 4.5 0.5 1.0 OD2 d:ASP396 4.6 0.3 1.0 O1A d:ADP601 4.7 0.2 1.0 O d:LEU158 4.7 99.4 1.0 N d:GLY92 4.8 89.8 1.0 CB d:SER157 4.8 99.9 1.0 CB d:ASP91 4.8 95.9 1.0 N d:LEU158 4.9 99.4 1.0 CB d:SER159 5.0 98.3 1.0 CB d:ASP396 5.0 0.3 1.0 C d:LEU158 5.0 99.4 1.0

Magnesium binding site 6 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:78.9 occ:1.00 O2A D:ADP601 2.1 0.2 1.0 O2B D:ADP601 2.1 0.1 1.0 OG D:SER157 2.2 96.2 1.0 OD1 D:ASP91 2.8 95.3 1.0 PB D:ADP601 3.1 0.6 1.0 CB D:SER157 3.3 96.2 1.0 PA D:ADP601 3.3 0.3 1.0 O D:SER157 3.4 96.2 1.0 O1B D:ADP601 3.4 0.6 1.0 O3A D:ADP601 3.5 0.8 1.0 CA D:SER157 3.7 96.2 1.0 CG D:ASP91 3.9 95.3 1.0 C D:SER157 4.0 96.2 1.0 OG D:SER160 4.0 94.7 1.0 N D:GLY92 4.3 89.6 1.0 O1A D:ADP601 4.4 0.0 1.0 O5' D:ADP601 4.4 0.4 1.0 OD2 D:ASP91 4.5 95.3 1.0 O3B D:ADP601 4.5 0.5 1.0 CB D:ASP396 4.6 97.3 1.0 OD2 D:ASP396 4.7 97.3 1.0 CG D:ASP396 4.9 97.3 1.0 F2 D:AF3603 5.0 47.6 1.0 CA D:ASP91 5.0 92.4 1.0 CB D:ASP91 5.0 95.3 1.0

Magnesium binding site 7 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ e:Mg602 b:78.9 occ:1.00 O3A e:ADP601 2.2 0.8 1.0 OD1 e:ASP117 2.2 95.6 1.0 CG e:ASP117 3.0 95.6 1.0 O1B e:ADP601 3.1 0.5 1.0 O2A e:ADP601 3.1 0.0 1.0 PB e:ADP601 3.2 0.6 1.0 PA e:ADP601 3.3 0.3 1.0 OD2 e:ASP117 3.3 95.6 1.0 F2 e:AF3603 3.5 47.6 1.0 O3B e:ADP601 3.8 0.6 1.0 AL e:AF3603 3.8 55.7 1.0 OG e:SER187 4.0 96.0 1.0 CB e:SER187 4.1 96.0 1.0 F1 e:AF3603 4.1 58.2 1.0 O5' e:ADP601 4.2 0.4 1.0 CB e:ASP117 4.3 95.6 1.0 CA e:SER187 4.3 95.7 1.0 N e:GLY118 4.3 92.3 1.0 O e:SER187 4.4 95.7 1.0 O1A e:ADP601 4.4 0.2 1.0 O2B e:ADP601 4.4 0.1 1.0 OG e:SER190 4.6 93.1 1.0 CA e:ASP117 4.7 93.4 1.0 F3 e:AF3603 4.8 62.6 1.0 C e:SER187 4.9 95.7 1.0

Magnesium binding site 8 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:78.9 occ:1.00 O3A E:ADP601 2.1 0.8 1.0 O1B E:ADP601 2.6 0.1 1.0 OD1 E:ASP117 2.8 96.2 1.0 PB E:ADP601 2.8 0.6 1.0 O2B E:ADP601 3.2 0.6 1.0 PA E:ADP601 3.5 0.3 1.0 F1 E:AF3603 3.5 58.2 1.0 O2A E:ADP601 3.6 0.0 1.0 OG E:SER187 3.7 95.8 1.0 CG E:ASP117 3.7 96.2 1.0 AL E:AF3603 4.0 55.7 1.0 CA E:SER187 4.1 95.1 1.0 O E:SER187 4.1 95.1 1.0 O5' E:ADP601 4.1 0.4 1.0 O3B E:ADP601 4.2 0.5 1.0 OD2 E:ASP117 4.2 96.2 1.0 CB E:SER187 4.3 95.8 1.0 N E:GLY118 4.5 93.2 1.0 F2 E:AF3603 4.5 47.6 1.0 C E:SER187 4.6 95.1 1.0 O1A E:ADP601 4.6 0.2 1.0 F3 E:AF3603 4.8 62.6 1.0 CB E:ASP117 4.9 96.2 1.0 CA E:ASP117 5.0 94.0 1.0

Magnesium binding site 9 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ g:Mg602 b:78.9 occ:1.00 O1A g:ADP601 2.1 0.0 1.0 OD1 g:ASP91 2.1 0.4 1.0 O3A g:ADP601 2.5 0.8 1.0 PA g:ADP601 2.8 0.3 1.0 CG g:ASP91 3.1 0.4 1.0 F1 g:AF3603 3.4 58.2 1.0 AL g:AF3603 3.6 55.7 1.0 F2 g:AF3603 3.6 47.6 1.0 OD2 g:ASP91 3.7 0.4 1.0 CB g:SER158 3.7 0.7 1.0 O5' g:ADP601 3.8 0.4 1.0 N g:GLY92 3.9 95.4 1.0 PB g:ADP601 3.9 0.6 1.0 O2A g:ADP601 4.0 0.2 1.0 CB g:ASP91 4.2 0.4 1.0 CA g:SER158 4.2 0.5 1.0 O3B g:ADP601 4.3 0.5 1.0 O1B g:ADP601 4.3 0.6 1.0 CA g:ASP91 4.4 97.9 1.0 C g:ASP91 4.6 97.9 1.0 CA g:GLY92 4.8 95.4 1.0 O g:SER158 4.8 0.5 1.0 F3 g:AF3603 4.8 62.6 1.0 O2B g:ADP601 5.0 0.1 1.0 OG g:SER158 5.0 0.7 1.0

Magnesium binding site 10 out of 16 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:78.9 occ:1.00 O1A G:ADP601 2.2 0.0 1.0 O3A G:ADP601 2.2 0.8 1.0 OD1 G:ASP91 2.5 99.0 1.0 PA G:ADP601 2.7 0.3 1.0 OG G:SER158 3.3 0.5 1.0 PB G:ADP601 3.3 0.6 1.0 F2 G:AF3603 3.4 47.6 1.0 O1B G:ADP601 3.5 0.1 1.0 CG G:ASP91 3.5 99.0 1.0 CB G:SER158 3.5 0.5 1.0 O3B G:ADP601 3.7 0.5 1.0 O2A G:ADP601 3.8 0.2 1.0 OD2 G:ASP91 3.8 99.0 1.0 O5' G:ADP601 3.8 0.4 1.0 CA G:SER158 3.8 0.5 1.0 AL G:AF3603 4.1 55.7 1.0 OG1 G:THR161 4.3 97.2 1.0 O G:SER158 4.3 0.5 1.0 N G:GLY92 4.5 94.6 1.0 F1 G:AF3603 4.5 58.2 1.0 O2B G:ADP601 4.6 0.6 1.0 C G:SER158 4.6 0.5 1.0 C5' G:ADP601 4.7 0.2 1.0 CB G:ASP91 4.8 99.0 1.0 N G:SER158 4.9 0.5 1.0

M.Jin, W.Han, C.Liu, Y.Zang, J.Li, F.Wang, Y.Wang, Y.Cong. An Ensemble of Cryo-Em Structures of Tric Reveal Its Conformational Landscape and Subunit Specificity. Proc.Natl.Acad.Sci.Usa V. 116 19513 2019.
ISSN: ESSN 1091-6490
PubMed: 31492816
DOI: 10.1073/PNAS.1903976116