Magnesium in PDB 6kz6: Crystal Structure of Asfv Dutpase

The structure of Crystal Structure of Asfv Dutpase, PDB code: 6kz6 was solved by Y.Guo, C.Chen, G.B.Li, L.Cao, C.W.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.13 / 2.19
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.256, 67.278, 116.912, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 22.8

The binding sites of Magnesium atom in the Crystal Structure of Asfv Dutpase (pdb code 6kz6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Asfv Dutpase, PDB code: 6kz6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Asfv Dutpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Asfv Dutpase within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg202 b:32.6 occ:1.00 O A:HOH339 2.1 31.0 1.0 O C:HOH323 2.2 24.1 1.0 O C:HOH313 2.2 26.3 1.0 O C:HOH415 2.3 31.0 1.0 O A:HOH319 2.5 26.9 1.0 OP1 A:UMP201 2.7 40.3 1.0 O A:HOH312 3.4 22.4 1.0 OD2 A:ASP91 3.9 20.6 1.0 P A:UMP201 4.1 44.1 1.0 O C:HOH352 4.1 33.0 1.0 OD1 C:ASP33 4.2 21.2 1.0 OE1 C:GLN120 4.2 17.0 1.0 OD2 C:ASP33 4.3 22.0 1.0 O C:HOH424 4.3 36.9 1.0 O5' A:UMP201 4.4 35.6 1.0 OD2 C:ASP29 4.5 29.4 1.0 C5' A:UMP201 4.5 29.8 1.0 O A:HOH352 4.6 25.9 1.0 CG C:ASP29 4.6 26.1 1.0 NH2 C:ARG71 4.6 24.7 1.0 CG C:ASP33 4.6 19.7 1.0 NE C:ARG71 4.7 20.9 1.0 CG A:ASP91 4.7 19.6 1.0 OP3 A:UMP201 4.8 38.1 1.0 OD1 A:ASP91 4.9 20.5 1.0 OD1 C:ASP29 5.0 27.5 1.0 O A:HOH394 5.0 30.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Asfv Dutpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Asfv Dutpase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:29.1 occ:1.00 O C:HOH396 2.1 23.6 1.0 O B:HOH423 2.1 31.7 1.0 O B:HOH403 2.2 30.0 1.0 O B:HOH513 2.2 26.6 1.0 OP1 C:UMP201 2.3 33.4 1.0 O C:HOH339 2.5 23.0 1.0 O B:HOH503 3.5 29.2 1.0 P C:UMP201 3.8 42.8 1.0 OD1 B:ASP33 3.9 21.6 1.0 NH2 B:ARG71 4.0 25.2 1.0 NE B:ARG71 4.1 22.2 1.0 OD2 B:ASP33 4.1 20.7 1.0 O5' C:UMP201 4.1 36.5 1.0 O C:HOH305 4.2 20.7 1.0 OD2 C:ASP91 4.3 20.0 1.0 OE1 B:GLN120 4.3 20.4 1.0 C5' C:UMP201 4.3 33.1 1.0 O C:HOH344 4.4 21.3 1.0 O B:HOH441 4.4 31.8 1.0 CG B:ASP33 4.4 20.6 1.0 CZ B:ARG71 4.5 23.7 1.0 OP3 C:UMP201 4.7 36.0 1.0 OP2 C:UMP201 4.8 41.2 1.0

G.B.Li, C.W.Wang, M.Yang, L.Cao, D.Fu, X.Liu, D.Sun, C.Chen, Y.Wang, Z.Jia, C.Yang, Y.Guo, Z.Rao. Structural Insight Into the African Swine Fever Virus Dutpase Reveals A Novel Folding Pattern in the Dutpase Family. J.Virol. 2019.
ISSN: ESSN 1098-5514
PubMed: 31748385
DOI: 10.1128/JVI.01698-19