Magnesium in PDB 6l0z: The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male

The structure of The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male, PDB code: 6l0z was solved by L.Wang, Y.Chen, W.Liu, J.Lan, F.Shang, Y.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.82 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	87.714, 89.692, 64.066, 90.00, 114.77, 90.00
R / Rfree (%)	15.7 / 18.1

The binding sites of Magnesium atom in the The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male (pdb code 6l0z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male, PDB code: 6l0z:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg406 b:64.8 occ:1.00 HZ1 A:LYS102 2.8 76.0 1.0 O A:HOH591 3.2 30.9 1.0 HE2 A:LYS102 3.3 58.8 1.0 HE3 A:LYS102 3.3 58.8 1.0 NZ A:LYS102 3.5 63.3 1.0 HG22 A:ILE104 3.6 35.6 1.0 CE A:LYS102 3.6 49.0 1.0 O A:LEU76 3.6 27.2 1.0 HG21 A:ILE104 3.8 35.6 1.0 O A:HOH673 3.8 41.1 1.0 O A:HOH780 4.0 54.6 1.0 O A:HOH710 4.0 47.3 1.0 HB2 A:GLU78 4.0 26.8 1.0 HZ3 A:LYS102 4.1 76.0 1.0 CG2 A:ILE104 4.1 29.6 1.0 HZ2 A:LYS102 4.1 76.0 1.0 H A:GLU78 4.2 29.9 1.0 HG23 A:ILE104 4.4 35.6 1.0 HB1 A:ALA71 4.4 29.0 1.0 N A:GLU78 4.5 24.9 1.0 HA A:GLU78 4.6 27.4 1.0 C A:LEU76 4.7 27.6 1.0 HA2 A:GLY74 4.7 31.0 1.0 HB2 A:LEU76 4.8 29.7 1.0 HB2 A:LYS102 4.8 35.8 1.0 HA A:ALA71 4.8 27.6 1.0 CB A:GLU78 4.9 22.4 1.0 O A:ALA71 4.9 24.5 1.0 CA A:GLU78 4.9 22.9 1.0 C A:ALA77 4.9 28.1 1.0 HA A:ALA77 5.0 28.5 1.0

Magnesium binding site 2 out of 3 in the The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg407 b:60.1 occ:1.00 O A:HOH612 2.2 51.8 1.0 HO3 A:ASO410 2.2 60.6 1.0 HH12 A:ARG344 2.2 32.3 0.5 HB3 A:GLN152 2.9 26.2 1.0 OE1 A:GLN152 2.9 29.7 1.0 O3 A:ASO410 2.9 50.5 1.0 NH1 A:ARG344 3.0 26.9 0.5 HH11 A:ARG344 3.4 32.3 0.5 HH22 A:ARG344 3.5 42.0 0.5 HH11 A:ARG344 3.5 46.9 0.5 HG3 A:GLN152 3.5 32.5 1.0 HD13 A:ILE348 3.6 36.6 1.0 HD11 A:ILE348 3.6 36.6 1.0 CB A:GLN152 3.8 21.8 1.0 CD A:GLN152 3.8 28.9 1.0 O A:HOH798 3.8 54.8 1.0 CG A:GLN152 3.9 27.1 1.0 CZ A:ARG344 3.9 33.2 0.5 CD1 A:ILE348 4.0 30.5 1.0 NH2 A:ARG344 4.0 35.0 0.5 C3 A:ASO410 4.1 48.3 1.0 H3 A:ASO410 4.1 58.0 1.0 HB2 A:GLN152 4.3 26.2 1.0 NH1 A:ARG344 4.3 39.1 0.5 HD'3 A:2ME405 4.4 71.3 1.0 HE A:ARG344 4.4 41.1 0.5 HA A:GLN152 4.5 22.4 1.0 HG12 A:ILE348 4.5 34.1 1.0 HD'1 A:2ME405 4.6 71.3 1.0 O2 A:ASO410 4.6 53.9 1.0 O A:HOH711 4.6 49.5 1.0 O A:HOH825 4.6 46.6 1.0 H2 A:ASO410 4.6 57.1 1.0 HH12 A:ARG344 4.7 46.9 0.5 HD12 A:ILE348 4.7 36.6 1.0 C2 A:ASO410 4.7 47.6 1.0 CA A:GLN152 4.7 18.7 1.0 HG2 A:GLN152 4.8 32.5 1.0 HH21 A:ARG344 4.8 42.0 0.5 HO4 A:ASO410 4.9 67.0 1.0 CD' A:2ME405 4.9 59.4 1.0 CG1 A:ILE348 4.9 28.4 1.0 O4 A:ASO410 5.0 55.8 1.0 O A:GLN152 5.0 25.5 1.0 HO2 A:ASO410 5.0 64.7 1.0

Magnesium binding site 3 out of 3 in the The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg408 b:38.4 occ:1.00 HA'2 A:2ME404 2.0 63.9 1.0 HA'1 A:2ME404 2.6 63.9 1.0 H A:LYS42 2.6 33.7 0.7 H A:LYS42 2.6 33.7 0.3 HA A:LYS42 2.7 29.8 1.0 CA' A:2ME404 2.7 53.2 1.0 OE1 A:GLU44 2.7 24.7 1.0 O A:HOH520 2.9 29.8 1.0 HH2 A:TRP62 2.9 29.5 1.0 HB'2 A:2ME404 3.1 62.0 1.0 HO2 A:ASO409 3.2 40.7 1.0 O A:HOH515 3.3 42.9 1.0 N A:LYS42 3.3 28.1 1.0 O2 A:ASO409 3.4 34.0 1.0 CA A:LYS42 3.4 24.8 1.0 CB' A:2ME404 3.5 51.6 1.0 HA'3 A:2ME404 3.5 63.9 1.0 CD A:GLU44 3.6 26.3 1.0 H A:LEU43 3.6 29.9 1.0 CH2 A:TRP62 3.7 24.6 1.0 OE2 A:GLU44 3.7 26.9 1.0 OD1 A:ASN12 3.8 24.6 1.0 OD1 A:ASP41 3.9 32.0 0.7 HZ3 A:TRP62 3.9 25.4 1.0 O A:HOH687 4.0 45.0 1.0 N A:LEU43 4.1 24.9 1.0 C A:LYS42 4.1 24.0 1.0 HB'1 A:2ME404 4.1 62.0 1.0 CZ3 A:TRP62 4.2 21.1 1.0 H A:GLU44 4.2 27.9 1.0 HA A:ASP41 4.3 37.2 0.7 HG2 A:LYS42 4.3 39.0 1.0 OC' A:2ME404 4.4 50.9 1.0 HA A:ASP41 4.4 37.3 0.3 C A:ASP41 4.5 31.7 0.7 C A:ASP41 4.5 31.7 0.3 CB A:LYS42 4.6 28.6 1.0 HG A:LEU43 4.6 29.1 1.0 C2 A:ASO409 4.6 35.2 1.0 H2 A:ASO409 4.6 42.2 1.0 CZ2 A:TRP62 4.7 23.1 1.0 HO3 A:ASO409 4.7 45.5 1.0 HZ2 A:TRP62 4.8 27.7 1.0 CG A:ASN12 4.8 26.6 1.0 HD21 A:ASN12 4.8 31.4 1.0 CG A:LYS42 4.8 32.5 1.0 HB3 A:LYS42 4.9 34.3 1.0 CG A:ASP41 4.9 34.3 0.7 HG3 A:LYS42 4.9 39.0 1.0 CG A:GLU44 4.9 24.5 1.0 CA A:ASP41 4.9 31.0 0.7 HB3 A:GLU44 4.9 29.8 1.0 O3 A:ASO409 5.0 37.9 1.0 CA A:ASP41 5.0 31.1 0.3

L.Wang, Y.Chen, W.Liu, J.Lan, F.Shang, Y.Xu. The Crystal Structure of Salmonella Enterica Sugar-Binding Protein Male To Be Published.