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Magnesium in PDB 6l7d: Mycobacterium Tuberculosis Enolase Mutant - S42A

Enzymatic activity of Mycobacterium Tuberculosis Enolase Mutant - S42A

All present enzymatic activity of Mycobacterium Tuberculosis Enolase Mutant - S42A:
4.2.1.11;

Protein crystallography data

The structure of Mycobacterium Tuberculosis Enolase Mutant - S42A, PDB code: 6l7d was solved by M.Ahmad, B.Jha, S.Tiwari, A.Dwivedy, B.K.Biswal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.88 / 3.00
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 139.315, 139.315, 90.049, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Tuberculosis Enolase Mutant - S42A (pdb code 6l7d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Mycobacterium Tuberculosis Enolase Mutant - S42A, PDB code: 6l7d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6l7d

Go back to Magnesium Binding Sites List in 6l7d
Magnesium binding site 1 out of 2 in the Mycobacterium Tuberculosis Enolase Mutant - S42A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Tuberculosis Enolase Mutant - S42A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg504

b:63.5
occ:1.00
O2 A:2PG501 2.1 80.7 1.0
OD2 A:ASP310 2.2 53.2 1.0
OD2 A:ASP241 2.2 48.4 1.0
OE2 A:GLU283 2.8 54.6 1.0
OD1 A:ASP241 2.9 58.7 1.0
CG A:ASP241 2.9 53.9 1.0
C1 A:2PG501 3.1 72.2 1.0
CG A:ASP310 3.3 57.6 1.0
O1 A:2PG501 3.4 63.9 1.0
OD2 A:ASP284 3.7 59.5 1.0
MG A:MG505 3.9 74.4 1.0
CB A:ASP310 4.0 58.0 1.0
CD A:GLU283 4.0 53.6 1.0
CB A:ALA243 4.0 67.1 1.0
OE1 A:GLN162 4.1 75.9 1.0
OD1 A:ASP310 4.3 51.9 1.0
CA A:ALA243 4.4 66.3 1.0
CB A:ASP241 4.4 57.8 1.0
CG A:ASP284 4.4 60.6 1.0
CB A:ASP284 4.4 57.9 1.0
C2 A:2PG501 4.4 68.0 1.0
O1P A:2PG501 4.6 64.4 1.0
CG A:GLU283 4.8 52.1 1.0
OE2 A:GLU163 4.8 67.4 1.0
CD A:GLN162 4.8 78.0 1.0
OE1 A:GLU283 4.8 58.6 1.0
N A:ALA243 4.9 60.9 1.0
NZ A:LYS335 4.9 50.6 1.0
OD2 A:ASP311 5.0 76.7 1.0
NE2 A:GLN162 5.0 74.0 1.0

Magnesium binding site 2 out of 2 in 6l7d

Go back to Magnesium Binding Sites List in 6l7d
Magnesium binding site 2 out of 2 in the Mycobacterium Tuberculosis Enolase Mutant - S42A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Tuberculosis Enolase Mutant - S42A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg505

b:74.4
occ:1.00
O3P A:2PG501 2.9 62.4 1.0
O A:ALA42 3.1 72.4 1.0
O2 A:2PG501 3.4 80.7 1.0
OD2 A:ASP311 3.5 76.7 1.0
OD1 A:ASP311 3.6 75.1 1.0
O1P A:2PG501 3.6 64.4 1.0
P A:2PG501 3.8 63.5 1.0
MG A:MG504 3.9 63.5 1.0
CG A:ASP311 3.9 72.1 1.0
OD2 A:ASP310 4.1 53.2 1.0
C1 A:2PG501 4.1 72.2 1.0
NZ A:LYS335 4.2 50.6 1.0
O4P A:2PG501 4.3 63.9 1.0
C A:ALA42 4.3 70.7 1.0
C2 A:2PG501 4.4 68.0 1.0
CG A:ASP310 4.8 57.6 1.0
NH2 A:ARG364 4.9 37.3 1.0
NE2 A:GLN162 4.9 74.0 1.0
OD1 A:ASP310 4.9 51.9 1.0
N A:GLY44 4.9 69.6 1.0

Reference:

M.Ahmad, B.Jha, S.Tiwari, A.Dwivedy, B.K.Biswal. Mycobacterium Tuberculosis Enolase Mutant - S42A To Be Published.
Page generated: Tue Oct 1 10:21:45 2024

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