Magnesium in PDB 6lcr: Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E1-Atp State

All present enzymatic activity of Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E1-Atp State:
7.6.2.1;

The binding sites of Magnesium atom in the Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E1-Atp State (pdb code 6lcr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E1-Atp State, PDB code: 6lcr:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E1-Atp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of DNF1 From Chaetomium Thermophilum in the E1-Atp State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:35.4 occ:1.00 OD2 A:ASP606 1.9 30.9 1.0 O1G A:ACP2002 2.1 65.2 1.0 CG A:ASP606 3.0 30.9 1.0 OD1 A:ASP1057 3.1 30.5 1.0 O A:THR608 3.1 39.7 1.0 OE2 A:GLU1078 3.4 61.8 1.0 OD2 A:ASP1061 3.4 32.6 1.0 OD1 A:ASP606 3.5 30.9 1.0 PG A:ACP2002 3.6 65.2 1.0 O A:ASP1057 3.8 30.5 1.0 C A:THR608 4.1 39.7 1.0 O2B A:ACP2002 4.2 65.2 1.0 CB A:THR608 4.2 39.7 1.0 CG A:ASP1057 4.3 30.5 1.0 CB A:ASP606 4.3 30.9 1.0 O2G A:ACP2002 4.4 65.2 1.0 CD A:GLU1078 4.4 61.8 1.0 CG A:ASP1061 4.4 32.6 1.0 O3G A:ACP2002 4.4 65.2 1.0 N A:THR608 4.5 39.7 1.0 CA A:THR608 4.5 39.7 1.0 C3B A:ACP2002 4.6 65.2 1.0 C A:ASP1057 4.7 30.5 1.0 OE1 A:GLU1078 4.7 61.8 1.0 OD1 A:ASP1061 4.8 32.6 1.0 N A:ASP1057 4.8 30.5 1.0 OD2 A:ASP1057 4.8 30.5 1.0 ND2 A:ASN1060 4.9 37.4 1.0 NZ A:LYS1037 4.9 31.1 1.0 CG2 A:THR608 4.9 39.7 1.0

Y.He, J.Xu, X.Wu, L.Li. Structures of A P4-Atpase Lipid Flippase in Lipid Bilayers. Protein Cell 2020.
ISSN: ESSN 1674-8018
PubMed: 32303992
DOI: 10.1007/S13238-020-00712-Y