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Magnesium in PDB 6lfe: Rat-Comt, Nitecapone,Sam and Mg Bond

Enzymatic activity of Rat-Comt, Nitecapone,Sam and Mg Bond

All present enzymatic activity of Rat-Comt, Nitecapone,Sam and Mg Bond:
2.1.1.6;

Protein crystallography data

The structure of Rat-Comt, Nitecapone,Sam and Mg Bond, PDB code: 6lfe was solved by K.Takebe, H.Iijima, M.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.92 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.665, 53.298, 80.786, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 16.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rat-Comt, Nitecapone,Sam and Mg Bond (pdb code 6lfe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rat-Comt, Nitecapone,Sam and Mg Bond, PDB code: 6lfe:

Magnesium binding site 1 out of 1 in 6lfe

Go back to Magnesium Binding Sites List in 6lfe
Magnesium binding site 1 out of 1 in the Rat-Comt, Nitecapone,Sam and Mg Bond


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rat-Comt, Nitecapone,Sam and Mg Bond within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:10.6
occ:1.00
OD2 A:ASP169 2.0 12.2 1.0
O A:HOH420 2.1 12.4 1.0
OD1 A:ASP141 2.1 10.9 1.0
O17 A:EAO302 2.1 10.8 1.0
OD1 A:ASN170 2.1 13.3 1.0
O19 A:EAO302 2.2 13.6 1.0
C16 A:EAO302 2.9 10.5 1.0
C18 A:EAO302 2.9 11.9 1.0
CG A:ASP141 3.0 11.0 1.0
CG A:ASP169 3.1 11.6 1.0
CG A:ASN170 3.1 14.7 1.0
OD2 A:ASP141 3.2 11.5 1.0
ND2 A:ASN170 3.5 11.4 1.0
CB A:ASP169 3.7 9.9 1.0
NZ A:LYS144 3.8 13.3 1.0
CE A:SAM301 3.9 21.9 1.0
OD1 A:ASP169 4.1 12.6 1.0
OE2 A:GLU199 4.2 13.3 1.0
C15 A:EAO302 4.2 12.5 1.0
C04 A:EAO302 4.2 14.3 1.0
O A:MET40 4.3 14.9 1.0
CB A:ASP141 4.4 11.6 1.0
CB A:ASN170 4.4 12.3 1.0
NZ A:LYS46 4.6 12.5 1.0
CE A:LYS144 4.7 15.8 1.0
OE1 A:GLU199 4.7 12.8 1.0
O03 A:EAO302 4.7 23.3 1.0
O A:ASP141 4.8 13.1 1.0
CD A:GLU199 4.9 12.2 1.0
CA A:ASP141 4.9 9.1 1.0
N02 A:EAO302 4.9 23.5 1.0
CA A:ASP169 5.0 8.6 1.0
N A:ASN170 5.0 10.3 1.0

Reference:

H.Iijima, K.Takebe, M.Suzuki, K.Kobayashi, T.Takamiya, H.Saito, N.Niwa, T.Kuwata-Kusunise. Rat Comt in Complex with Sam. Mg and Nitecapone. To Be Published.
Page generated: Tue Oct 1 10:24:35 2024

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