Magnesium in PDB 6ljj: Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion

The structure of Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion, PDB code: 6ljj was solved by R.Liang, G.Q.Peng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.46 / 1.89
Space group	F 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	162.386, 162.386, 162.386, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 23.1

The binding sites of Magnesium atom in the Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion (pdb code 6ljj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion, PDB code: 6ljj:

Magnesium binding site 1 out of 1 in the Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:18.0 occ:1.00 O1A A:DUP301 2.1 16.0 1.0 O3G A:DUP301 2.1 18.9 1.0 O1B A:DUP301 2.1 18.0 1.0 O A:HOH479 2.2 13.1 1.0 PG A:DUP301 3.1 19.1 1.0 PB A:DUP301 3.2 15.6 1.0 PA A:DUP301 3.3 17.3 1.0 O3B A:DUP301 3.4 17.4 1.0 N3A A:DUP301 3.7 17.2 1.0 O1G A:DUP301 3.8 17.0 1.0 NH1 A:ARG210 3.9 21.1 1.0 C5' A:DUP301 4.3 15.8 1.0 O5' A:DUP301 4.3 15.3 1.0 O2A A:DUP301 4.3 17.5 1.0 O2G A:DUP301 4.4 17.2 1.0 O A:HOH417 4.5 22.1 1.0 OG1 A:THR218 4.5 19.8 1.0 O2B A:DUP301 4.5 17.6 1.0 CZ A:ARG210 4.9 18.7 1.0

R.Liang, G.Wang, D.Zhang, G.Ye, M.Li, Y.Shi, J.Shi, H.Chen, G.Peng. Structural Comparisons of Host and African Swine Fever Virus Dutpases Reveal New Clues For Inhibitor Development. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33139328
DOI: 10.1074/JBC.RA120.014005