Atomistry » Magnesium » PDB 6l5l-6ll1 » 6ljj
Atomistry »
  Magnesium »
    PDB 6l5l-6ll1 »
      6ljj »

Magnesium in PDB 6ljj: Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion

Protein crystallography data

The structure of Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion, PDB code: 6ljj was solved by R.Liang, G.Q.Peng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.46 / 1.89
Space group F 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 162.386, 162.386, 162.386, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 23.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion (pdb code 6ljj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion, PDB code: 6ljj:

Magnesium binding site 1 out of 1 in 6ljj

Go back to Magnesium Binding Sites List in 6ljj
Magnesium binding site 1 out of 1 in the Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Swine Dutpase in Complex with Alpha,Beta-Iminodutp and Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:18.0
occ:1.00
O1A A:DUP301 2.1 16.0 1.0
O3G A:DUP301 2.1 18.9 1.0
O1B A:DUP301 2.1 18.0 1.0
O A:HOH479 2.2 13.1 1.0
PG A:DUP301 3.1 19.1 1.0
PB A:DUP301 3.2 15.6 1.0
PA A:DUP301 3.3 17.3 1.0
O3B A:DUP301 3.4 17.4 1.0
N3A A:DUP301 3.7 17.2 1.0
O1G A:DUP301 3.8 17.0 1.0
NH1 A:ARG210 3.9 21.1 1.0
C5' A:DUP301 4.3 15.8 1.0
O5' A:DUP301 4.3 15.3 1.0
O2A A:DUP301 4.3 17.5 1.0
O2G A:DUP301 4.4 17.2 1.0
O A:HOH417 4.5 22.1 1.0
OG1 A:THR218 4.5 19.8 1.0
O2B A:DUP301 4.5 17.6 1.0
CZ A:ARG210 4.9 18.7 1.0

Reference:

R.Liang, G.Wang, D.Zhang, G.Ye, M.Li, Y.Shi, J.Shi, H.Chen, G.Peng. Structural Comparisons of Host and African Swine Fever Virus Dutpases Reveal New Clues For Inhibitor Development. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33139328
DOI: 10.1074/JBC.RA120.014005
Page generated: Tue Oct 1 10:27:50 2024

Last articles

Cl in 2Z4O
Cl in 2Z3J
Cl in 2Z2W
Cl in 2Z0R
Cl in 2Z2N
Cl in 2Z19
Cl in 2Z2K
Cl in 2Z0L
Cl in 2Z2D
Cl in 2Z18
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy