Magnesium in PDB 6lly: Cryoem Structure of SERCA2B Wt in E2-BEF3- State

All present enzymatic activity of Cryoem Structure of SERCA2B Wt in E2-BEF3- State:
7.2.2.10;

The structure of Cryoem Structure of SERCA2B Wt in E2-BEF3- State also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Cryoem Structure of SERCA2B Wt in E2-BEF3- State (pdb code 6lly). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of SERCA2B Wt in E2-BEF3- State, PDB code: 6lly:

Magnesium binding site 1 out of 1 in the Cryoem Structure of SERCA2B Wt in E2-BEF3- State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of SERCA2B Wt in E2-BEF3- State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2002 b:9.7 occ:1.00 OD2 A:ASP351 2.0 23.2 1.0 OD1 A:ASP702 2.1 18.5 1.0 O A:THR353 2.1 20.2 1.0 F1 A:BEF2001 2.3 19.8 0.0 CG A:ASP702 3.1 18.5 1.0 CG A:ASP351 3.3 23.2 1.0 C A:THR353 3.3 20.2 1.0 OD2 A:ASP702 3.5 18.5 1.0 BE A:BEF2001 3.7 19.8 0.0 O A:ASP702 3.8 18.5 1.0 OD1 A:ASP351 3.9 23.2 1.0 C A:ASP702 4.1 18.5 1.0 OG1 A:THR355 4.1 20.2 1.0 CA A:THR353 4.2 20.2 1.0 N A:GLY354 4.2 20.2 1.0 CB A:THR353 4.2 20.2 1.0 OD2 A:ASP706 4.2 15.0 1.0 O A:SER178 4.2 9.4 1.0 CA A:GLY354 4.3 20.2 1.0 CB A:ASP702 4.3 18.5 1.0 CB A:ASP351 4.4 23.2 1.0 N A:ASP702 4.4 18.5 1.0 N A:THR353 4.4 20.2 1.0 CA A:ASP702 4.5 18.5 1.0 F2 A:BEF2001 4.5 19.8 0.0 OD1 A:ASN705 4.6 13.9 1.0 N A:THR355 4.6 20.2 1.0 N A:GLY703 4.6 13.8 1.0 CG2 A:THR353 4.7 20.2 1.0 F3 A:BEF2001 4.7 19.8 0.0 C A:GLY354 4.7 20.2 1.0 CA A:GLY703 4.8 13.8 1.0

Y.Zhang, M.Inoue, A.Tsutsumi, S.Watanabe, T.Nishizawa, K.Nagata, M.Kikkawa, K.Inaba. Cryo-Em Structures of SERCA2B Reveal the Mechanism of Regulation By the Luminal Extension Tail. Sci Adv V. 6 B0147 2020.
ISSN: ESSN 2375-2548
PubMed: 32851169
DOI: 10.1126/SCIADV.ABB0147