Magnesium in PDB 6lps: Crystal Structure of Family 10 Xylanase From Bacillus Halodurans

All present enzymatic activity of Crystal Structure of Family 10 Xylanase From Bacillus Halodurans:
3.2.1.8;

The structure of Crystal Structure of Family 10 Xylanase From Bacillus Halodurans, PDB code: 6lps was solved by L.Xiang, G.Zhang, J.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.17 / 2.21
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	158.45, 42.353, 58.769, 90, 98.59, 90
R / Rfree (%)	16.5 / 20.9

The binding sites of Magnesium atom in the Crystal Structure of Family 10 Xylanase From Bacillus Halodurans (pdb code 6lps). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Family 10 Xylanase From Bacillus Halodurans, PDB code: 6lps:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Family 10 Xylanase From Bacillus Halodurans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Family 10 Xylanase From Bacillus Halodurans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:29.7 occ:1.00 O A:ARG357 2.0 28.4 1.0 OD1 A:ASP360 2.1 38.4 1.0 OD1 A:ASP298 2.1 26.9 1.0 O A:HOH508 2.1 34.9 1.0 O A:HOH576 2.2 28.7 1.0 O A:HOH521 2.3 26.5 1.0 CG A:ASP360 3.2 36.8 1.0 C A:ARG357 3.2 30.5 1.0 CG A:ASP298 3.3 30.7 1.0 OD2 A:ASP360 3.6 34.5 1.0 OE1 A:GLU302 3.7 44.0 1.0 O A:HOH530 4.0 23.9 1.0 CA A:ARG357 4.1 26.0 1.0 N A:ILE358 4.1 27.7 1.0 OD2 A:ASP298 4.1 36.8 1.0 CA A:ASP298 4.2 24.1 1.0 O A:HOH596 4.2 37.1 1.0 CA A:ILE358 4.2 29.9 1.0 CG A:GLU302 4.2 35.7 1.0 C A:ASP360 4.2 37.5 1.0 O A:ASP298 4.2 30.9 1.0 CB A:ASP298 4.3 26.4 1.0 O A:ASP360 4.3 43.5 1.0 CD A:GLU302 4.4 42.9 1.0 CB A:ASP360 4.5 31.4 1.0 CB A:ARG357 4.6 27.6 1.0 C A:ASP298 4.6 26.1 1.0 N A:ASP360 4.7 39.6 1.0 CA A:ASP360 4.7 36.9 1.0 C A:ILE358 4.8 31.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Family 10 Xylanase From Bacillus Halodurans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Family 10 Xylanase From Bacillus Halodurans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:32.2 occ:1.00 O A:GLN28 2.2 26.5 1.0 O A:ILE311 2.3 23.1 1.0 O A:SER308 2.4 29.3 1.0 O A:HOH698 2.5 28.0 1.0 O A:HOH700 2.5 35.8 1.0 O A:HOH694 2.6 29.3 1.0 C A:ILE311 3.3 26.1 1.0 C A:GLN28 3.5 26.5 1.0 C A:SER308 3.6 27.5 1.0 CA A:SER312 3.7 23.9 1.0 N A:SER312 4.0 21.9 1.0 CA A:PHE29 4.2 26.2 1.0 CB A:PHE29 4.2 19.1 1.0 N A:PHE29 4.3 20.7 1.0 N A:ILE311 4.3 25.0 1.0 CA A:ALA309 4.4 24.4 1.0 CA A:ILE311 4.4 22.6 1.0 N A:ALA309 4.4 25.6 1.0 CA A:GLN28 4.5 31.1 1.0 O A:HOH693 4.5 37.3 1.0 C A:SER312 4.5 20.9 1.0 CA A:SER308 4.5 26.8 1.0 C A:ALA309 4.5 28.1 1.0 O A:HOH676 4.6 31.0 1.0 O A:SER312 4.7 20.5 1.0 O A:HOH644 4.7 36.2 1.0 O A:ALA309 4.7 27.6 1.0 CB A:SER312 4.8 19.0 1.0 CB A:SER308 4.8 26.3 1.0 CD2 A:PHE29 4.8 26.0 1.0 N A:THR310 5.0 28.7 1.0

L.Xiang, G.Zhang, J.Zhou. Crystal Structure of Family 10 Xylanase From Bacillus Halodurans To Be Published.