Magnesium in PDB 6lt4: Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound

Magnesium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Magnesium atom in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound (pdb code 6lt4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 28 binding sites of Magnesium where determined in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound, PDB code: 6lt4:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 28 in 6lt4

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Magnesium binding site 1 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:50.1
occ:1.00
 O3A A:AGS802 1.9 55.6 1.0
O1B A:AGS802 2.2 55.6 1.0
PB A:AGS802 2.3 55.6 1.0
CG2 A:THR128 2.5 48.8 1.0
O2B A:AGS802 2.8 55.6 1.0
OG1 A:THR128 2.8 48.8 1.0
PA A:AGS802 2.9 55.6 1.0
O2A A:AGS802 3.0 55.6 1.0
CB A:THR128 3.2 48.8 1.0
O5' A:AGS802 3.5 55.6 1.0
O2G A:AGS802 3.6 55.6 1.0
O3B A:AGS802 3.8 55.6 1.0
N A:THR128 4.1 48.8 1.0
O1A A:AGS802 4.2 55.6 1.0
O3' A:AGS802 4.2 55.6 1.0
CA A:THR128 4.3 48.8 1.0
PG A:AGS802 4.4 55.6 1.0
C5' A:AGS802 4.9 55.6 1.0
C3' A:AGS802 5.0 55.6 1.0

Magnesium binding site 2 out of 28 in 6lt4

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Magnesium binding site 2 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:151.3
occ:1.00
 O3B A:AGS803 2.2 144.0 1.0
O2B A:AGS803 2.5 144.0 1.0
CB A:LYS458 2.5 155.9 1.0
N A:THR459 2.5 129.4 1.0
N A:LYS458 2.6 155.9 1.0
CA A:LYS458 2.7 155.9 1.0
PB A:AGS803 2.8 144.0 1.0
C A:LYS458 2.9 155.9 1.0
CG2 A:THR459 3.0 129.4 1.0
S1G A:AGS803 3.1 144.0 1.0
PG A:AGS803 3.2 144.0 1.0
O A:THR454 3.4 158.8 1.0
O3A A:AGS803 3.5 144.0 1.0
C A:GLY457 3.6 148.6 1.0
OG1 A:THR459 3.6 129.4 1.0
CB A:THR459 3.6 129.4 1.0
CA A:THR459 3.6 129.4 1.0
CG A:LYS458 3.8 155.9 1.0
O A:LYS458 4.0 155.9 1.0
O2G A:AGS803 4.1 144.0 1.0
O1B A:AGS803 4.2 144.0 1.0
O A:GLY457 4.3 148.6 1.0
CA A:GLY457 4.3 148.6 1.0
C A:THR454 4.3 158.8 1.0
O3G A:AGS803 4.3 144.0 1.0
CD A:LYS458 4.5 155.9 1.0
CA A:THR454 4.7 158.8 1.0
N A:GLY457 4.7 148.6 1.0
C A:THR459 4.8 129.4 1.0
C5' A:AGS803 4.8 144.0 1.0
N A:GLU460 5.0 129.8 1.0

Magnesium binding site 3 out of 28 in 6lt4

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Magnesium binding site 3 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:68.3
occ:1.00
 O3A B:AGS802 1.9 61.5 1.0
O1B B:AGS802 2.2 61.5 1.0
PB B:AGS802 2.3 61.5 1.0
CG2 B:THR128 2.5 52.3 1.0
O2B B:AGS802 2.8 61.5 1.0
OG1 B:THR128 2.8 52.3 1.0
PA B:AGS802 2.9 61.5 1.0
O2A B:AGS802 3.0 61.5 1.0
CB B:THR128 3.2 52.3 1.0
O5' B:AGS802 3.5 61.5 1.0
O2G B:AGS802 3.6 61.5 1.0
O3B B:AGS802 3.8 61.5 1.0
N B:THR128 4.1 52.3 1.0
O1A B:AGS802 4.2 61.5 1.0
O3' B:AGS802 4.2 61.5 1.0
CA B:THR128 4.3 52.3 1.0
PG B:AGS802 4.4 61.5 1.0
C5' B:AGS802 4.9 61.5 1.0
C3' B:AGS802 5.0 61.5 1.0

Magnesium binding site 4 out of 28 in 6lt4

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Magnesium binding site 4 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg804

b:138.4
occ:1.00
 O3B B:AGS803 2.2 137.3 1.0
O2B B:AGS803 2.5 137.3 1.0
CB B:LYS458 2.5 141.4 1.0
N B:THR459 2.5 121.7 1.0
N B:LYS458 2.6 141.4 1.0
CA B:LYS458 2.7 141.4 1.0
PB B:AGS803 2.8 137.3 1.0
C B:LYS458 2.9 141.4 1.0
CG2 B:THR459 3.0 121.7 1.0
S1G B:AGS803 3.1 137.3 1.0
PG B:AGS803 3.2 137.3 1.0
O B:THR454 3.4 148.5 1.0
O3A B:AGS803 3.5 137.3 1.0
C B:GLY457 3.6 137.9 1.0
OG1 B:THR459 3.6 121.7 1.0
CB B:THR459 3.6 121.7 1.0
CA B:THR459 3.6 121.7 1.0
CG B:LYS458 3.8 141.4 1.0
O B:LYS458 4.0 141.4 1.0
O2G B:AGS803 4.1 137.3 1.0
O1B B:AGS803 4.2 137.3 1.0
O B:GLY457 4.3 137.9 1.0
CA B:GLY457 4.3 137.9 1.0
C B:THR454 4.3 148.5 1.0
O3G B:AGS803 4.3 137.3 1.0
CD B:LYS458 4.5 141.4 1.0
CA B:THR454 4.7 148.5 1.0
N B:GLY457 4.7 137.9 1.0
C B:THR459 4.8 121.7 1.0
C5' B:AGS803 4.8 137.3 1.0
N B:GLU460 5.0 122.3 1.0

Magnesium binding site 5 out of 28 in 6lt4

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Magnesium binding site 5 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:47.5
occ:1.00
 O3A C:AGS802 1.9 53.7 1.0
O1B C:AGS802 2.2 53.7 1.0
PB C:AGS802 2.3 53.7 1.0
CG2 C:THR128 2.5 49.2 1.0
O2B C:AGS802 2.8 53.7 1.0
OG1 C:THR128 2.8 49.2 1.0
PA C:AGS802 2.9 53.7 1.0
O2A C:AGS802 3.0 53.7 1.0
CB C:THR128 3.2 49.2 1.0
O5' C:AGS802 3.5 53.7 1.0
O2G C:AGS802 3.6 53.7 1.0
O3B C:AGS802 3.8 53.7 1.0
N C:THR128 4.1 49.2 1.0
O1A C:AGS802 4.2 53.7 1.0
O3' C:AGS802 4.3 53.7 1.0
CA C:THR128 4.3 49.2 1.0
PG C:AGS802 4.4 53.7 1.0
C5' C:AGS802 4.9 53.7 1.0
C3' C:AGS802 5.0 53.7 1.0

Magnesium binding site 6 out of 28 in 6lt4

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Magnesium binding site 6 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg804

b:142.4
occ:1.00
 O3B C:AGS803 2.2 139.5 1.0
O2B C:AGS803 2.5 139.5 1.0
CB C:LYS458 2.5 141.4 1.0
N C:THR459 2.5 125.2 1.0
N C:LYS458 2.6 141.4 1.0
CA C:LYS458 2.7 141.4 1.0
PB C:AGS803 2.8 139.5 1.0
C C:LYS458 2.9 141.4 1.0
CG2 C:THR459 3.0 125.2 1.0
S1G C:AGS803 3.1 139.5 1.0
PG C:AGS803 3.2 139.5 1.0
O C:THR454 3.4 155.9 1.0
O3A C:AGS803 3.5 139.5 1.0
C C:GLY457 3.6 143.2 1.0
OG1 C:THR459 3.6 125.2 1.0
CB C:THR459 3.6 125.2 1.0
CA C:THR459 3.6 125.2 1.0
CG C:LYS458 3.8 141.4 1.0
O C:LYS458 4.0 141.4 1.0
O2G C:AGS803 4.1 139.5 1.0
O1B C:AGS803 4.2 139.5 1.0
O C:GLY457 4.3 143.2 1.0
CA C:GLY457 4.3 143.2 1.0
C C:THR454 4.3 155.9 1.0
O3G C:AGS803 4.3 139.5 1.0
CD C:LYS458 4.5 141.4 1.0
CA C:THR454 4.7 155.9 1.0
N C:GLY457 4.7 143.2 1.0
C C:THR459 4.8 125.2 1.0
C5' C:AGS803 4.8 139.5 1.0
N C:GLU460 5.0 124.9 1.0

Magnesium binding site 7 out of 28 in 6lt4

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Magnesium binding site 7 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg801

b:67.0
occ:1.00
 O3A D:AGS802 1.9 59.4 1.0
O1B D:AGS802 2.2 59.4 1.0
PB D:AGS802 2.3 59.4 1.0
CG2 D:THR128 2.5 53.1 1.0
O2B D:AGS802 2.8 59.4 1.0
OG1 D:THR128 2.8 53.1 1.0
PA D:AGS802 2.9 59.4 1.0
O2A D:AGS802 3.0 59.4 1.0
CB D:THR128 3.2 53.1 1.0
O5' D:AGS802 3.5 59.4 1.0
O2G D:AGS802 3.6 59.4 1.0
O3B D:AGS802 3.8 59.4 1.0
N D:THR128 4.1 53.1 1.0
O1A D:AGS802 4.2 59.4 1.0
O3' D:AGS802 4.3 59.4 1.0
CA D:THR128 4.3 53.1 1.0
PG D:AGS802 4.4 59.4 1.0
C5' D:AGS802 4.9 59.4 1.0
C3' D:AGS802 5.0 59.4 1.0

Magnesium binding site 8 out of 28 in 6lt4

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Magnesium binding site 8 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg804

b:153.2
occ:1.00
 O3B D:AGS803 2.2 150.4 1.0
O2B D:AGS803 2.5 150.4 1.0
CB D:LYS458 2.5 152.3 1.0
N D:THR459 2.5 131.4 1.0
N D:LYS458 2.6 152.3 1.0
CA D:LYS458 2.7 152.3 1.0
PB D:AGS803 2.8 150.4 1.0
C D:LYS458 2.9 152.3 1.0
CG2 D:THR459 3.0 131.4 1.0
S1G D:AGS803 3.1 150.4 1.0
PG D:AGS803 3.2 150.4 1.0
O D:THR454 3.4 161.4 1.0
O3A D:AGS803 3.5 150.4 1.0
C D:GLY457 3.6 152.3 1.0
OG1 D:THR459 3.6 131.4 1.0
CB D:THR459 3.6 131.4 1.0
CA D:THR459 3.6 131.4 1.0
CG D:LYS458 3.8 152.3 1.0
O D:LYS458 4.0 152.3 1.0
O2G D:AGS803 4.1 150.4 1.0
O1B D:AGS803 4.2 150.4 1.0
O D:GLY457 4.3 152.3 1.0
CA D:GLY457 4.3 152.3 1.0
C D:THR454 4.3 161.4 1.0
O3G D:AGS803 4.3 150.4 1.0
CD D:LYS458 4.5 152.3 1.0
CA D:THR454 4.7 161.4 1.0
N D:GLY457 4.7 152.3 1.0
C D:THR459 4.8 131.4 1.0
C5' D:AGS803 4.8 150.4 1.0
N D:GLU460 5.0 130.7 1.0

Magnesium binding site 9 out of 28 in 6lt4

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Magnesium binding site 9 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg801

b:49.6
occ:1.00
 O3A E:AGS802 1.9 49.0 1.0
O1B E:AGS802 2.2 49.0 1.0
PB E:AGS802 2.3 49.0 1.0
CG2 E:THR128 2.5 39.5 1.0
O2B E:AGS802 2.8 49.0 1.0
OG1 E:THR128 2.8 39.5 1.0
PA E:AGS802 2.9 49.0 1.0
O2A E:AGS802 3.0 49.0 1.0
CB E:THR128 3.2 39.5 1.0
O5' E:AGS802 3.5 49.0 1.0
O2G E:AGS802 3.6 49.0 1.0
O3B E:AGS802 3.8 49.0 1.0
N E:THR128 4.1 39.5 1.0
O1A E:AGS802 4.2 49.0 1.0
O3' E:AGS802 4.2 49.0 1.0
CA E:THR128 4.3 39.5 1.0
PG E:AGS802 4.4 49.0 1.0
C5' E:AGS802 4.9 49.0 1.0
C3' E:AGS802 5.0 49.0 1.0

Magnesium binding site 10 out of 28 in 6lt4

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Magnesium binding site 10 out of 28 in the Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Aaa+ Atpase, Clpl From Streptococcus Pneumoniae: Atprs-Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg804

b:159.7
occ:1.00
 O3B E:AGS803 2.2 155.2 1.0
O2B E:AGS803 2.5 155.2 1.0
CB E:LYS458 2.5 152.0 1.0
N E:THR459 2.5 139.4 1.0
N E:LYS458 2.6 152.0 1.0
CA E:LYS458 2.7 152.0 1.0
PB E:AGS803 2.8 155.2 1.0
C E:LYS458 2.9 152.0 1.0
CG2 E:THR459 3.0 139.4 1.0
S1G E:AGS803 3.1 155.2 1.0
PG E:AGS803 3.2 155.2 1.0
O E:THR454 3.4 155.9 1.0
O3A E:AGS803 3.5 155.2 1.0
C E:GLY457 3.6 155.5 1.0
OG1 E:THR459 3.6 139.4 1.0
CB E:THR459 3.6 139.4 1.0
CA E:THR459 3.6 139.4 1.0
CG E:LYS458 3.8 152.0 1.0
O E:LYS458 4.0 152.0 1.0
O2G E:AGS803 4.1 155.2 1.0
O1B E:AGS803 4.2 155.2 1.0
O E:GLY457 4.3 155.5 1.0
CA E:GLY457 4.3 155.5 1.0
C E:THR454 4.3 155.9 1.0
O3G E:AGS803 4.3 155.2 1.0
CD E:LYS458 4.5 152.0 1.0
CA E:THR454 4.7 155.9 1.0
N E:GLY457 4.7 155.5 1.0
C E:THR459 4.8 139.4 1.0
C5' E:AGS803 4.8 155.2 1.0
N E:GLU460 5.0 138.9 1.0

Reference:

G.Kim, S.G.Lee, S.Han, J.Jung, H.S.Jeong, J.K.Hyun, D.K.Rhee, H.M.Kim, S.Lee. Clpl Is A Functionally Active Tetradecameric Aaa+ Chaperone, Distinct From Hexameric/Dodecameric Ones. Faseb J. V. 34 14353 2020.
ISSN: ESSN 1530-6860
PubMed: 32910525
DOI: 10.1096/FJ.202000843R
Page generated: Wed Mar 3 14:50:52 2021

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