Magnesium in PDB 6lu1: Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Enzymatic activity of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
All present enzymatic activity of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution:
1.97.1.12;
Other elements in 6lu1:
The structure of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 1 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:18.6
occ:1.00
|
MG
|
A:CLA801
|
0.0
|
18.6
|
1.0
|
NB
|
A:CLA801
|
1.9
|
18.6
|
1.0
|
ND
|
A:CLA801
|
1.9
|
18.6
|
1.0
|
NA
|
A:CLA801
|
2.0
|
18.6
|
1.0
|
NC
|
A:CLA801
|
2.0
|
18.6
|
1.0
|
C4D
|
A:CLA801
|
2.9
|
18.6
|
1.0
|
C1C
|
A:CLA801
|
3.0
|
18.6
|
1.0
|
C4A
|
A:CLA801
|
3.0
|
18.6
|
1.0
|
C1A
|
A:CLA801
|
3.0
|
18.6
|
1.0
|
C1B
|
A:CLA801
|
3.0
|
18.6
|
1.0
|
C4B
|
A:CLA801
|
3.0
|
18.6
|
1.0
|
C1D
|
A:CLA801
|
3.1
|
18.6
|
1.0
|
C4C
|
A:CLA801
|
3.1
|
18.6
|
1.0
|
NE2
|
A:HIS680
|
3.3
|
18.6
|
1.0
|
CAB
|
B:CLA805
|
3.4
|
5.8
|
1.0
|
CHA
|
A:CLA801
|
3.4
|
18.6
|
1.0
|
CHB
|
A:CLA801
|
3.4
|
18.6
|
1.0
|
CHC
|
A:CLA801
|
3.4
|
18.6
|
1.0
|
CHD
|
A:CLA801
|
3.5
|
18.6
|
1.0
|
C3B
|
B:CLA805
|
3.6
|
5.8
|
1.0
|
C4B
|
B:CLA805
|
3.9
|
5.8
|
1.0
|
CD2
|
A:HIS680
|
4.1
|
18.6
|
1.0
|
C3D
|
A:CLA801
|
4.1
|
18.6
|
1.0
|
CHC
|
B:CLA805
|
4.1
|
5.8
|
1.0
|
C2B
|
A:CLA801
|
4.2
|
18.6
|
1.0
|
C3B
|
A:CLA801
|
4.2
|
18.6
|
1.0
|
C2D
|
A:CLA801
|
4.2
|
18.6
|
1.0
|
CE1
|
A:HIS680
|
4.2
|
18.6
|
1.0
|
C2C
|
A:CLA801
|
4.3
|
18.6
|
1.0
|
C2B
|
B:CLA805
|
4.3
|
5.8
|
1.0
|
C3A
|
A:CLA801
|
4.3
|
18.6
|
1.0
|
C2A
|
A:CLA801
|
4.3
|
18.6
|
1.0
|
C3C
|
A:CLA801
|
4.3
|
18.6
|
1.0
|
CBB
|
B:CLA805
|
4.5
|
5.8
|
1.0
|
NB
|
B:CLA805
|
4.6
|
5.8
|
1.0
|
CBD
|
A:CLA801
|
4.8
|
18.6
|
1.0
|
C1C
|
B:CLA805
|
4.9
|
5.8
|
1.0
|
CMB
|
B:CLA805
|
4.9
|
5.8
|
1.0
|
C1B
|
B:CLA805
|
5.0
|
5.8
|
1.0
|
|
Magnesium binding site 2 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 2 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg802
b:18.6
occ:1.00
|
MG
|
A:CLA802
|
0.0
|
18.6
|
1.0
|
ND
|
A:CLA802
|
1.9
|
18.6
|
1.0
|
NB
|
A:CLA802
|
1.9
|
18.6
|
1.0
|
NA
|
A:CLA802
|
2.0
|
18.6
|
1.0
|
NC
|
A:CLA802
|
2.0
|
18.6
|
1.0
|
C4D
|
A:CLA802
|
2.9
|
18.6
|
1.0
|
C4A
|
A:CLA802
|
3.0
|
18.6
|
1.0
|
C1C
|
A:CLA802
|
3.0
|
18.6
|
1.0
|
C1B
|
A:CLA802
|
3.0
|
18.6
|
1.0
|
C1A
|
A:CLA802
|
3.0
|
18.6
|
1.0
|
C4B
|
A:CLA802
|
3.0
|
18.6
|
1.0
|
C1D
|
A:CLA802
|
3.1
|
18.6
|
1.0
|
C4C
|
A:CLA802
|
3.1
|
18.6
|
1.0
|
CBB
|
A:CLA860
|
3.3
|
12.8
|
1.0
|
CHA
|
A:CLA802
|
3.4
|
18.6
|
1.0
|
CHB
|
A:CLA802
|
3.4
|
18.6
|
1.0
|
CHC
|
A:CLA802
|
3.4
|
18.6
|
1.0
|
CHD
|
A:CLA802
|
3.5
|
18.6
|
1.0
|
CAB
|
A:CLA860
|
3.9
|
12.8
|
1.0
|
C3D
|
A:CLA802
|
4.1
|
18.6
|
1.0
|
C2B
|
A:CLA802
|
4.1
|
18.6
|
1.0
|
C3B
|
A:CLA802
|
4.2
|
18.6
|
1.0
|
C2D
|
A:CLA802
|
4.2
|
18.6
|
1.0
|
C2C
|
A:CLA802
|
4.3
|
18.6
|
1.0
|
C3A
|
A:CLA802
|
4.3
|
18.6
|
1.0
|
C3C
|
A:CLA802
|
4.3
|
18.6
|
1.0
|
C2A
|
A:CLA802
|
4.3
|
18.6
|
1.0
|
CB
|
B:ALA664
|
4.4
|
11.0
|
1.0
|
CBD
|
A:CLA802
|
4.9
|
18.6
|
1.0
|
C3B
|
A:CLA860
|
4.9
|
12.8
|
1.0
|
|
Magnesium binding site 3 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 3 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:33.2
occ:1.00
|
MG
|
A:CLA803
|
0.0
|
33.2
|
1.0
|
NB
|
A:CLA803
|
2.0
|
33.2
|
1.0
|
NA
|
A:CLA803
|
2.0
|
33.2
|
1.0
|
ND
|
A:CLA803
|
2.0
|
33.2
|
1.0
|
NC
|
A:CLA803
|
2.0
|
33.2
|
1.0
|
C4D
|
A:CLA803
|
2.9
|
33.2
|
1.0
|
C4A
|
A:CLA803
|
3.0
|
33.2
|
1.0
|
C1C
|
A:CLA803
|
3.0
|
33.2
|
1.0
|
C1A
|
A:CLA803
|
3.0
|
33.2
|
1.0
|
C1B
|
A:CLA803
|
3.0
|
33.2
|
1.0
|
NE2
|
A:HIS52
|
3.1
|
21.9
|
1.0
|
C4B
|
A:CLA803
|
3.1
|
33.2
|
1.0
|
C1D
|
A:CLA803
|
3.1
|
33.2
|
1.0
|
C4C
|
A:CLA803
|
3.1
|
33.2
|
1.0
|
CHA
|
A:CLA803
|
3.4
|
33.2
|
1.0
|
CHB
|
A:CLA803
|
3.4
|
33.2
|
1.0
|
CHC
|
A:CLA803
|
3.4
|
33.2
|
1.0
|
CHD
|
A:CLA803
|
3.5
|
33.2
|
1.0
|
C39
|
A:BCR861
|
3.6
|
49.3
|
1.0
|
CD2
|
A:HIS52
|
4.0
|
21.9
|
1.0
|
CE1
|
A:HIS52
|
4.0
|
21.9
|
1.0
|
C3D
|
A:CLA803
|
4.1
|
33.2
|
1.0
|
C2B
|
A:CLA803
|
4.2
|
33.2
|
1.0
|
C3B
|
A:CLA803
|
4.2
|
33.2
|
1.0
|
C2D
|
A:CLA803
|
4.2
|
33.2
|
1.0
|
C2C
|
A:CLA803
|
4.3
|
33.2
|
1.0
|
C2A
|
A:CLA803
|
4.3
|
33.2
|
1.0
|
C3A
|
A:CLA803
|
4.3
|
33.2
|
1.0
|
C3C
|
A:CLA803
|
4.3
|
33.2
|
1.0
|
C30
|
A:BCR861
|
4.8
|
49.3
|
1.0
|
CBD
|
A:CLA803
|
4.9
|
33.2
|
1.0
|
CAA
|
A:CLA803
|
4.9
|
33.2
|
1.0
|
C25
|
A:BCR861
|
4.9
|
49.3
|
1.0
|
|
Magnesium binding site 4 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 4 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:25.1
occ:1.00
|
MG
|
A:CLA804
|
0.0
|
25.1
|
1.0
|
NA
|
A:CLA804
|
2.0
|
25.1
|
1.0
|
NB
|
A:CLA804
|
2.0
|
25.1
|
1.0
|
ND
|
A:CLA804
|
2.0
|
25.1
|
1.0
|
NC
|
A:CLA804
|
2.0
|
25.1
|
1.0
|
C4D
|
A:CLA804
|
2.9
|
25.1
|
1.0
|
C4A
|
A:CLA804
|
3.0
|
25.1
|
1.0
|
C1A
|
A:CLA804
|
3.0
|
25.1
|
1.0
|
C1C
|
A:CLA804
|
3.0
|
25.1
|
1.0
|
C1B
|
A:CLA804
|
3.0
|
25.1
|
1.0
|
C4B
|
A:CLA804
|
3.1
|
25.1
|
1.0
|
C1D
|
A:CLA804
|
3.1
|
25.1
|
1.0
|
NE2
|
A:HIS56
|
3.1
|
18.0
|
1.0
|
C4C
|
A:CLA804
|
3.1
|
25.1
|
1.0
|
CHA
|
A:CLA804
|
3.4
|
25.1
|
1.0
|
CHB
|
A:CLA804
|
3.4
|
25.1
|
1.0
|
CHC
|
A:CLA804
|
3.4
|
25.1
|
1.0
|
C7
|
A:CLA811
|
3.5
|
30.1
|
1.0
|
CHD
|
A:CLA804
|
3.5
|
25.1
|
1.0
|
CE1
|
A:HIS56
|
3.9
|
18.0
|
1.0
|
C6
|
A:CLA811
|
4.1
|
30.1
|
1.0
|
C3D
|
A:CLA804
|
4.1
|
25.1
|
1.0
|
CD2
|
A:HIS56
|
4.2
|
18.0
|
1.0
|
C2B
|
A:CLA804
|
4.2
|
25.1
|
1.0
|
C5
|
A:CLA811
|
4.2
|
30.1
|
1.0
|
C3B
|
A:CLA804
|
4.2
|
25.1
|
1.0
|
C2D
|
A:CLA804
|
4.2
|
25.1
|
1.0
|
C2A
|
A:CLA804
|
4.3
|
25.1
|
1.0
|
C2C
|
A:CLA804
|
4.3
|
25.1
|
1.0
|
C3A
|
A:CLA804
|
4.3
|
25.1
|
1.0
|
C3C
|
A:CLA804
|
4.3
|
25.1
|
1.0
|
C8
|
A:CLA811
|
4.3
|
30.1
|
1.0
|
C9
|
A:CLA811
|
4.5
|
30.1
|
1.0
|
C10
|
A:CLA811
|
4.5
|
30.1
|
1.0
|
CAA
|
A:CLA804
|
4.6
|
25.1
|
1.0
|
CBD
|
A:CLA804
|
4.9
|
25.1
|
1.0
|
|
Magnesium binding site 5 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 5 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg805
b:12.7
occ:1.00
|
MG
|
A:CLA805
|
0.0
|
12.7
|
1.0
|
NB
|
A:CLA805
|
1.9
|
12.7
|
1.0
|
ND
|
A:CLA805
|
2.0
|
12.7
|
1.0
|
NA
|
A:CLA805
|
2.0
|
12.7
|
1.0
|
NC
|
A:CLA805
|
2.0
|
12.7
|
1.0
|
C4D
|
A:CLA805
|
2.9
|
12.7
|
1.0
|
C1C
|
A:CLA805
|
3.0
|
12.7
|
1.0
|
C4A
|
A:CLA805
|
3.0
|
12.7
|
1.0
|
NE2
|
A:HIS76
|
3.0
|
12.5
|
1.0
|
C1A
|
A:CLA805
|
3.0
|
12.7
|
1.0
|
C1B
|
A:CLA805
|
3.0
|
12.7
|
1.0
|
C4B
|
A:CLA805
|
3.1
|
12.7
|
1.0
|
C1D
|
A:CLA805
|
3.1
|
12.7
|
1.0
|
C4C
|
A:CLA805
|
3.1
|
12.7
|
1.0
|
CHA
|
A:CLA805
|
3.4
|
12.7
|
1.0
|
CHB
|
A:CLA805
|
3.4
|
12.7
|
1.0
|
CHC
|
A:CLA805
|
3.4
|
12.7
|
1.0
|
CHD
|
A:CLA805
|
3.5
|
12.7
|
1.0
|
CD2
|
A:HIS76
|
3.5
|
12.5
|
1.0
|
CMB
|
A:CLA830
|
3.7
|
14.8
|
1.0
|
CE1
|
A:HIS76
|
4.0
|
12.5
|
1.0
|
C3D
|
A:CLA805
|
4.1
|
12.7
|
1.0
|
C2B
|
A:CLA805
|
4.2
|
12.7
|
1.0
|
C3B
|
A:CLA805
|
4.2
|
12.7
|
1.0
|
C2D
|
A:CLA805
|
4.2
|
12.7
|
1.0
|
C2C
|
A:CLA805
|
4.3
|
12.7
|
1.0
|
C3A
|
A:CLA805
|
4.3
|
12.7
|
1.0
|
C2A
|
A:CLA805
|
4.3
|
12.7
|
1.0
|
C3C
|
A:CLA805
|
4.3
|
12.7
|
1.0
|
CG
|
A:HIS76
|
4.6
|
12.5
|
1.0
|
CAA
|
A:CLA805
|
4.8
|
12.7
|
1.0
|
ND1
|
A:HIS76
|
4.8
|
12.5
|
1.0
|
CG2
|
A:ILE72
|
4.9
|
16.3
|
1.0
|
CBD
|
A:CLA805
|
4.9
|
12.7
|
1.0
|
|
Magnesium binding site 6 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 6 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg806
b:12.1
occ:1.00
|
MG
|
A:CLA806
|
0.0
|
12.1
|
1.0
|
ND
|
A:CLA806
|
1.9
|
12.1
|
1.0
|
NB
|
A:CLA806
|
1.9
|
12.1
|
1.0
|
NA
|
A:CLA806
|
2.0
|
12.1
|
1.0
|
NC
|
A:CLA806
|
2.0
|
12.1
|
1.0
|
C4D
|
A:CLA806
|
2.9
|
12.1
|
1.0
|
C4A
|
A:CLA806
|
3.0
|
12.1
|
1.0
|
C1C
|
A:CLA806
|
3.0
|
12.1
|
1.0
|
C1A
|
A:CLA806
|
3.0
|
12.1
|
1.0
|
C1B
|
A:CLA806
|
3.0
|
12.1
|
1.0
|
NE2
|
A:HIS79
|
3.0
|
12.1
|
1.0
|
C4B
|
A:CLA806
|
3.1
|
12.1
|
1.0
|
C1D
|
A:CLA806
|
3.1
|
12.1
|
1.0
|
C4C
|
A:CLA806
|
3.1
|
12.1
|
1.0
|
CHA
|
A:CLA806
|
3.4
|
12.1
|
1.0
|
CHB
|
A:CLA806
|
3.4
|
12.1
|
1.0
|
CHC
|
A:CLA806
|
3.4
|
12.1
|
1.0
|
CHD
|
A:CLA806
|
3.5
|
12.1
|
1.0
|
CD2
|
A:HIS79
|
3.7
|
12.1
|
1.0
|
CE1
|
A:HIS79
|
4.1
|
12.1
|
1.0
|
C3D
|
A:CLA806
|
4.1
|
12.1
|
1.0
|
C2B
|
A:CLA806
|
4.2
|
12.1
|
1.0
|
C3B
|
A:CLA806
|
4.2
|
12.1
|
1.0
|
C2D
|
A:CLA806
|
4.2
|
12.1
|
1.0
|
C16
|
A:CLA806
|
4.2
|
12.1
|
1.0
|
C2C
|
A:CLA806
|
4.3
|
12.1
|
1.0
|
C3A
|
A:CLA806
|
4.3
|
12.1
|
1.0
|
C2A
|
A:CLA806
|
4.3
|
12.1
|
1.0
|
C3C
|
A:CLA806
|
4.3
|
12.1
|
1.0
|
C18
|
A:CLA806
|
4.4
|
12.1
|
1.0
|
C17
|
A:CLA806
|
4.6
|
12.1
|
1.0
|
CBD
|
A:CLA806
|
4.9
|
12.1
|
1.0
|
CG
|
A:HIS79
|
5.0
|
12.1
|
1.0
|
|
Magnesium binding site 7 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 7 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg807
b:26.6
occ:1.00
|
MG
|
A:CLA807
|
0.0
|
26.6
|
1.0
|
NB
|
A:CLA807
|
2.0
|
26.6
|
1.0
|
ND
|
A:CLA807
|
2.0
|
26.6
|
1.0
|
NA
|
A:CLA807
|
2.0
|
26.6
|
1.0
|
NC
|
A:CLA807
|
2.0
|
26.6
|
1.0
|
C4D
|
A:CLA807
|
2.9
|
26.6
|
1.0
|
C4A
|
A:CLA807
|
3.0
|
26.6
|
1.0
|
C1C
|
A:CLA807
|
3.0
|
26.6
|
1.0
|
C1A
|
A:CLA807
|
3.0
|
26.6
|
1.0
|
C1B
|
A:CLA807
|
3.0
|
26.6
|
1.0
|
C4B
|
A:CLA807
|
3.1
|
26.6
|
1.0
|
C1D
|
A:CLA807
|
3.1
|
26.6
|
1.0
|
C4C
|
A:CLA807
|
3.1
|
26.6
|
1.0
|
NE2
|
A:HIS93
|
3.2
|
20.9
|
1.0
|
CHB
|
A:CLA807
|
3.4
|
26.6
|
1.0
|
CHA
|
A:CLA807
|
3.4
|
26.6
|
1.0
|
CHC
|
A:CLA807
|
3.4
|
26.6
|
1.0
|
CHD
|
A:CLA807
|
3.5
|
26.6
|
1.0
|
CE1
|
A:HIS93
|
4.1
|
20.9
|
1.0
|
C3D
|
A:CLA807
|
4.1
|
26.6
|
1.0
|
C14
|
A:BCR853
|
4.2
|
36.8
|
1.0
|
C13
|
A:BCR853
|
4.2
|
36.8
|
1.0
|
C2B
|
A:CLA807
|
4.2
|
26.6
|
1.0
|
C3B
|
A:CLA807
|
4.2
|
26.6
|
1.0
|
C2D
|
A:CLA807
|
4.2
|
26.6
|
1.0
|
CD2
|
A:HIS93
|
4.3
|
20.9
|
1.0
|
C2C
|
A:CLA807
|
4.3
|
26.6
|
1.0
|
C3A
|
A:CLA807
|
4.3
|
26.6
|
1.0
|
C3C
|
A:CLA807
|
4.3
|
26.6
|
1.0
|
C2A
|
A:CLA807
|
4.3
|
26.6
|
1.0
|
C15
|
A:BCR853
|
4.5
|
36.8
|
1.0
|
C12
|
A:BCR853
|
4.6
|
36.8
|
1.0
|
C35
|
A:BCR853
|
4.6
|
36.8
|
1.0
|
CBA
|
A:CLA807
|
4.8
|
26.6
|
1.0
|
CBD
|
A:CLA807
|
4.9
|
26.6
|
1.0
|
|
Magnesium binding site 8 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 8 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg808
b:16.1
occ:1.00
|
MG
|
A:CLA808
|
0.0
|
16.1
|
1.0
|
NB
|
A:CLA808
|
1.9
|
16.1
|
1.0
|
ND
|
A:CLA808
|
2.0
|
16.1
|
1.0
|
NA
|
A:CLA808
|
2.0
|
16.1
|
1.0
|
NC
|
A:CLA808
|
2.0
|
16.1
|
1.0
|
C4D
|
A:CLA808
|
2.9
|
16.1
|
1.0
|
C4A
|
A:CLA808
|
3.0
|
16.1
|
1.0
|
C1C
|
A:CLA808
|
3.0
|
16.1
|
1.0
|
C1A
|
A:CLA808
|
3.0
|
16.1
|
1.0
|
C1B
|
A:CLA808
|
3.0
|
16.1
|
1.0
|
C4B
|
A:CLA808
|
3.1
|
16.1
|
1.0
|
C1D
|
A:CLA808
|
3.1
|
16.1
|
1.0
|
C4C
|
A:CLA808
|
3.1
|
16.1
|
1.0
|
CHB
|
A:CLA808
|
3.4
|
16.1
|
1.0
|
CHA
|
A:CLA808
|
3.4
|
16.1
|
1.0
|
CHC
|
A:CLA808
|
3.4
|
16.1
|
1.0
|
CHD
|
A:CLA808
|
3.5
|
16.1
|
1.0
|
C1
|
A:CLA828
|
3.6
|
13.2
|
1.0
|
OE1
|
A:GLN115
|
3.9
|
20.6
|
1.0
|
C3D
|
A:CLA808
|
4.1
|
16.1
|
1.0
|
C4
|
A:CLA828
|
4.1
|
13.2
|
1.0
|
C2
|
A:CLA828
|
4.2
|
13.2
|
1.0
|
CD
|
A:GLN115
|
4.2
|
20.6
|
1.0
|
C2B
|
A:CLA808
|
4.2
|
16.1
|
1.0
|
C2D
|
A:CLA808
|
4.2
|
16.1
|
1.0
|
C3B
|
A:CLA808
|
4.2
|
16.1
|
1.0
|
C2C
|
A:CLA808
|
4.3
|
16.1
|
1.0
|
C2A
|
A:CLA808
|
4.3
|
16.1
|
1.0
|
C3A
|
A:CLA808
|
4.3
|
16.1
|
1.0
|
C3C
|
A:CLA808
|
4.3
|
16.1
|
1.0
|
O2A
|
A:CLA828
|
4.4
|
13.2
|
1.0
|
C3
|
A:CLA828
|
4.4
|
13.2
|
1.0
|
NE2
|
A:GLN115
|
4.6
|
20.6
|
1.0
|
CAA
|
A:CLA808
|
4.6
|
16.1
|
1.0
|
O1A
|
A:CLA828
|
4.7
|
13.2
|
1.0
|
CG
|
A:GLN115
|
4.7
|
20.6
|
1.0
|
CGA
|
A:CLA828
|
4.8
|
13.2
|
1.0
|
CBD
|
A:CLA808
|
4.9
|
16.1
|
1.0
|
|
Magnesium binding site 9 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 9 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg809
b:23.0
occ:1.00
|
MG
|
A:CLA809
|
0.0
|
23.0
|
1.0
|
ND
|
A:CLA809
|
2.0
|
23.0
|
1.0
|
NB
|
A:CLA809
|
2.0
|
23.0
|
1.0
|
NA
|
A:CLA809
|
2.0
|
23.0
|
1.0
|
NC
|
A:CLA809
|
2.0
|
23.0
|
1.0
|
C4D
|
A:CLA809
|
2.9
|
23.0
|
1.0
|
C4A
|
A:CLA809
|
3.0
|
23.0
|
1.0
|
C1C
|
A:CLA809
|
3.0
|
23.0
|
1.0
|
C1B
|
A:CLA809
|
3.0
|
23.0
|
1.0
|
C1A
|
A:CLA809
|
3.1
|
23.0
|
1.0
|
OE1
|
A:GLN123
|
3.1
|
24.6
|
1.0
|
C4B
|
A:CLA809
|
3.1
|
23.0
|
1.0
|
C1D
|
A:CLA809
|
3.1
|
23.0
|
1.0
|
C4C
|
A:CLA809
|
3.1
|
23.0
|
1.0
|
CHB
|
A:CLA809
|
3.3
|
23.0
|
1.0
|
CHA
|
A:CLA809
|
3.4
|
23.0
|
1.0
|
CHC
|
A:CLA809
|
3.4
|
23.0
|
1.0
|
CHD
|
A:CLA809
|
3.5
|
23.0
|
1.0
|
C13
|
A:CLA828
|
3.6
|
13.2
|
1.0
|
C15
|
A:CLA828
|
4.0
|
13.2
|
1.0
|
CD
|
A:GLN123
|
4.1
|
24.6
|
1.0
|
C3D
|
A:CLA809
|
4.1
|
23.0
|
1.0
|
C2B
|
A:CLA809
|
4.2
|
23.0
|
1.0
|
C2D
|
A:CLA809
|
4.2
|
23.0
|
1.0
|
C12
|
A:CLA828
|
4.3
|
13.2
|
1.0
|
C3B
|
A:CLA809
|
4.3
|
23.0
|
1.0
|
C2C
|
A:CLA809
|
4.3
|
23.0
|
1.0
|
C3A
|
A:CLA809
|
4.3
|
23.0
|
1.0
|
C3C
|
A:CLA809
|
4.3
|
23.0
|
1.0
|
C16
|
A:CLA828
|
4.3
|
13.2
|
1.0
|
C2A
|
A:CLA809
|
4.4
|
23.0
|
1.0
|
NE2
|
A:GLN123
|
4.5
|
24.6
|
1.0
|
C14
|
A:CLA828
|
4.6
|
13.2
|
1.0
|
CBD
|
A:CLA809
|
4.9
|
23.0
|
1.0
|
C11
|
A:CLA828
|
5.0
|
13.2
|
1.0
|
|
Magnesium binding site 10 out
of 82 in 6lu1
Go back to
Magnesium Binding Sites List in 6lu1
Magnesium binding site 10 out
of 82 in the Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cyanobacterial Psi Monomer From T. Elongatus By Single Particle Cryo- Em at 3.2 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg810
b:22.6
occ:1.00
|
MG
|
A:CLA810
|
0.0
|
22.6
|
1.0
|
NB
|
A:CLA810
|
2.0
|
22.6
|
1.0
|
NA
|
A:CLA810
|
2.0
|
22.6
|
1.0
|
ND
|
A:CLA810
|
2.0
|
22.6
|
1.0
|
NC
|
A:CLA810
|
2.0
|
22.6
|
1.0
|
C4D
|
A:CLA810
|
2.9
|
22.6
|
1.0
|
C4A
|
A:CLA810
|
3.0
|
22.6
|
1.0
|
C1C
|
A:CLA810
|
3.0
|
22.6
|
1.0
|
C1A
|
A:CLA810
|
3.0
|
22.6
|
1.0
|
C1B
|
A:CLA810
|
3.0
|
22.6
|
1.0
|
C4B
|
A:CLA810
|
3.1
|
22.6
|
1.0
|
C4C
|
A:CLA810
|
3.1
|
22.6
|
1.0
|
C1D
|
A:CLA810
|
3.1
|
22.6
|
1.0
|
NE2
|
A:HIS179
|
3.4
|
24.1
|
1.0
|
CHB
|
A:CLA810
|
3.4
|
22.6
|
1.0
|
CHA
|
A:CLA810
|
3.4
|
22.6
|
1.0
|
CHC
|
A:CLA810
|
3.4
|
22.6
|
1.0
|
CHD
|
A:CLA810
|
3.5
|
22.6
|
1.0
|
CE1
|
A:HIS179
|
3.9
|
24.1
|
1.0
|
C31
|
A:BCR854
|
3.9
|
27.7
|
1.0
|
C6
|
A:BCR854
|
4.1
|
27.7
|
1.0
|
C3D
|
A:CLA810
|
4.1
|
22.6
|
1.0
|
C2B
|
A:CLA810
|
4.2
|
22.6
|
1.0
|
C3B
|
A:CLA810
|
4.2
|
22.6
|
1.0
|
C2D
|
A:CLA810
|
4.2
|
22.6
|
1.0
|
C2C
|
A:CLA810
|
4.3
|
22.6
|
1.0
|
C7
|
A:BCR854
|
4.3
|
27.7
|
1.0
|
C3C
|
A:CLA810
|
4.3
|
22.6
|
1.0
|
C5
|
A:BCR854
|
4.3
|
27.7
|
1.0
|
C3A
|
A:CLA810
|
4.3
|
22.6
|
1.0
|
C2A
|
A:CLA810
|
4.3
|
22.6
|
1.0
|
C1
|
A:BCR854
|
4.4
|
27.7
|
1.0
|
C2
|
A:BCR854
|
4.4
|
27.7
|
1.0
|
CD2
|
A:HIS179
|
4.6
|
24.1
|
1.0
|
C4
|
A:BCR854
|
4.8
|
27.7
|
1.0
|
C33
|
A:BCR854
|
4.8
|
27.7
|
1.0
|
CBD
|
A:CLA810
|
4.9
|
22.6
|
1.0
|
|
Reference:
O.Coruh,
A.Frank,
H.Tanaka,
A.Kawamoto,
E.El-Mohsnawy,
T.Kato,
K.Namba,
C.Gerle,
M.M.Nowaczyk,
G.Kurisu.
Cryo-Em Structure of A Functional Monomeric Photosystem I From Thermosynechococcus Elongatus Reveals Red Chlorophyll Cluster. Commun Biol V. 4 304 2021.
ISSN: ESSN 2399-3642
PubMed: 33686186
DOI: 10.1038/S42003-021-01808-9
Page generated: Tue Oct 1 10:37:12 2024
|