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Magnesium in PDB 6luh: High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase

Enzymatic activity of High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase

All present enzymatic activity of High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase:
3.5.3.25;

Protein crystallography data

The structure of High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase, PDB code: 6luh was solved by K.Oda, Y.Matoba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.09 / 1.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 46.326, 47.057, 59.261, 83.57, 84.63, 70.13
R / Rfree (%) 20 / 23

Other elements in 6luh:

The structure of High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase also contains other interesting chemical elements:

Manganese (Mn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase (pdb code 6luh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase, PDB code: 6luh:

Magnesium binding site 1 out of 1 in 6luh

Go back to Magnesium Binding Sites List in 6luh
Magnesium binding site 1 out of 1 in the High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of High Resolution Structure of N(Omega)-Hydroxy-L-Arginine Hydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:25.5
occ:1.00
 O A:HOH783 2.0 20.3 1.0
O A:HOH548 2.2 22.1 1.0
O A:ASN77 2.2 14.9 1.0
O A:HOH540 2.2 15.8 1.0
O A:HOH680 2.2 19.5 1.0
O A:HOH724 2.2 22.9 1.0
C A:ASN77 3.2 14.1 1.0
O A:ILE235 3.7 10.4 1.0
N A:LEU78 4.0 13.6 1.0
N A:ASN77 4.0 17.5 1.0
O A:HOH532 4.0 23.5 1.0
CA A:LEU78 4.1 10.5 1.0
CA A:ASN77 4.1 16.9 1.0
O A:HOH761 4.2 22.1 1.0
C A:ASP76 4.3 22.7 1.0
O A:GLY75 4.5 20.6 1.0
C A:ILE235 4.6 10.3 1.0
N A:THR79 4.6 8.6 1.0
O A:ASP76 4.6 23.9 1.0
O A:SER72 4.7 15.0 1.0
CA A:ILE235 4.7 8.3 1.0
OG1 A:THR79 4.7 12.7 1.0
O A:LEU234 4.7 11.2 1.0
C A:LEU78 4.8 11.3 1.0
O A:ILE73 4.8 21.1 1.0
O A:HOH698 4.8 23.6 1.0
CA A:ASP76 5.0 23.2 1.0

Reference:

K.Oda, N.Shimotani, T.Kuroda, Y.Matoba. Crystal Structure of An Nomega-Hydroxy-L-Arginine Hydrolase Found in the D-Cycloserine Biosynthetic Pathway. Acta Crystallogr D Struct V. 76 506 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32496212
DOI: 10.1107/S2059798320004908
Page generated: Wed Aug 13 11:29:36 2025

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