Magnesium in PDB 6ly5: Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
Other elements in 6ly5:
The structure of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
240;
Page 25, Binding sites: 241 -
250;
Page 26, Binding sites: 251 -
260;
Page 27, Binding sites: 261 -
270;
Page 28, Binding sites: 271 -
280;
Page 29, Binding sites: 281 -
290;
Page 30, Binding sites: 291 -
300;
Page 31, Binding sites: 301 -
310;
Page 32, Binding sites: 311 -
320;
Page 33, Binding sites: 321 -
330;
Page 34, Binding sites: 331 -
340;
Page 35, Binding sites: 341 -
350;
Page 36, Binding sites: 351 -
360;
Binding sites:
The binding sites of Magnesium atom in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
(pdb code 6ly5). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 360 binding sites of Magnesium where determined in the
Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex, PDB code: 6ly5:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 1 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg305
b:46.6
occ:1.00
|
MG
|
A:CLA305
|
0.0
|
46.6
|
1.0
|
NB
|
A:CLA305
|
2.0
|
46.6
|
1.0
|
ND
|
A:CLA305
|
2.0
|
46.6
|
1.0
|
NC
|
A:CLA305
|
2.1
|
46.6
|
1.0
|
NA
|
A:CLA305
|
2.1
|
46.6
|
1.0
|
C4D
|
A:CLA305
|
2.9
|
46.6
|
1.0
|
O
|
A:ALA39
|
2.9
|
43.2
|
1.0
|
C1B
|
A:CLA305
|
3.0
|
46.6
|
1.0
|
C4A
|
A:CLA305
|
3.0
|
46.6
|
1.0
|
C4B
|
A:CLA305
|
3.1
|
46.6
|
1.0
|
C1C
|
A:CLA305
|
3.1
|
46.6
|
1.0
|
C4C
|
A:CLA305
|
3.1
|
46.6
|
1.0
|
C1D
|
A:CLA305
|
3.1
|
46.6
|
1.0
|
C1A
|
A:CLA305
|
3.2
|
46.6
|
1.0
|
CHB
|
A:CLA305
|
3.4
|
46.6
|
1.0
|
CHC
|
A:CLA305
|
3.4
|
46.6
|
1.0
|
CHA
|
A:CLA305
|
3.5
|
46.6
|
1.0
|
CHD
|
A:CLA305
|
3.5
|
46.6
|
1.0
|
C10
|
A:SQD315
|
3.8
|
20.0
|
1.0
|
C
|
A:ALA39
|
3.8
|
43.2
|
1.0
|
C9
|
A:SQD315
|
3.9
|
20.0
|
1.0
|
C8
|
A:SQD315
|
4.2
|
20.0
|
1.0
|
C3D
|
A:CLA305
|
4.2
|
46.6
|
1.0
|
C2B
|
A:CLA305
|
4.3
|
46.6
|
1.0
|
C3B
|
A:CLA305
|
4.3
|
46.6
|
1.0
|
C2C
|
A:CLA305
|
4.3
|
46.6
|
1.0
|
C2D
|
A:CLA305
|
4.3
|
46.6
|
1.0
|
C3C
|
A:CLA305
|
4.4
|
46.6
|
1.0
|
CA
|
A:VAL40
|
4.4
|
41.0
|
1.0
|
C3A
|
A:CLA305
|
4.4
|
46.6
|
1.0
|
C2A
|
A:CLA305
|
4.5
|
46.6
|
1.0
|
N
|
A:VAL40
|
4.5
|
41.0
|
1.0
|
CA
|
A:ALA39
|
4.7
|
43.2
|
1.0
|
CB
|
A:VAL40
|
4.7
|
41.0
|
1.0
|
CD
|
A:PRO41
|
4.9
|
38.5
|
1.0
|
CBD
|
A:CLA305
|
4.9
|
46.6
|
1.0
|
CG2
|
A:VAL40
|
5.0
|
41.0
|
1.0
|
|
Magnesium binding site 2 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 2 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg306
b:53.5
occ:1.00
|
MG
|
A:CLA306
|
0.0
|
53.5
|
1.0
|
NB
|
A:CLA306
|
2.0
|
53.5
|
1.0
|
ND
|
A:CLA306
|
2.0
|
53.5
|
1.0
|
NC
|
A:CLA306
|
2.1
|
53.5
|
1.0
|
NA
|
A:CLA306
|
2.1
|
53.5
|
1.0
|
C4D
|
A:CLA306
|
3.0
|
53.5
|
1.0
|
C4A
|
A:CLA306
|
3.0
|
53.5
|
1.0
|
C1B
|
A:CLA306
|
3.0
|
53.5
|
1.0
|
C4B
|
A:CLA306
|
3.0
|
53.5
|
1.0
|
C1A
|
A:CLA306
|
3.1
|
53.5
|
1.0
|
C1C
|
A:CLA306
|
3.1
|
53.5
|
1.0
|
C4C
|
A:CLA306
|
3.1
|
53.5
|
1.0
|
C1D
|
A:CLA306
|
3.2
|
53.5
|
1.0
|
CHB
|
A:CLA306
|
3.4
|
53.5
|
1.0
|
CHC
|
A:CLA306
|
3.4
|
53.5
|
1.0
|
O3
|
A:SQD315
|
3.4
|
20.0
|
1.0
|
CHA
|
A:CLA306
|
3.5
|
53.5
|
1.0
|
CHD
|
A:CLA306
|
3.5
|
53.5
|
1.0
|
C2
|
A:SQD315
|
3.8
|
20.0
|
1.0
|
C4
|
A:SQD315
|
3.9
|
20.0
|
1.0
|
C3
|
A:SQD315
|
3.9
|
20.0
|
1.0
|
C3D
|
A:CLA306
|
4.2
|
53.5
|
1.0
|
NZ
|
A:LYS179
|
4.2
|
48.1
|
1.0
|
C3B
|
A:CLA306
|
4.3
|
53.5
|
1.0
|
C3A
|
A:CLA306
|
4.4
|
53.5
|
1.0
|
C2D
|
A:CLA306
|
4.4
|
53.5
|
1.0
|
C2B
|
A:CLA306
|
4.4
|
53.5
|
1.0
|
C2A
|
A:CLA306
|
4.4
|
53.5
|
1.0
|
C2C
|
A:CLA306
|
4.4
|
53.5
|
1.0
|
C3C
|
A:CLA306
|
4.4
|
53.5
|
1.0
|
O5
|
A:SQD315
|
4.6
|
20.0
|
1.0
|
O2
|
A:SQD315
|
4.7
|
20.0
|
1.0
|
CBA
|
A:CLA306
|
4.8
|
53.5
|
1.0
|
C1
|
A:SQD315
|
4.8
|
20.0
|
1.0
|
C5
|
A:SQD315
|
4.8
|
20.0
|
1.0
|
O4
|
A:SQD315
|
4.9
|
20.0
|
1.0
|
CBD
|
A:CLA306
|
4.9
|
53.5
|
1.0
|
CMD
|
A:KC1312
|
5.0
|
48.4
|
1.0
|
|
Magnesium binding site 3 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 3 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg307
b:35.2
occ:1.00
|
MG
|
A:CLA307
|
0.0
|
35.2
|
1.0
|
NB
|
A:CLA307
|
2.0
|
35.2
|
1.0
|
ND
|
A:CLA307
|
2.0
|
35.2
|
1.0
|
NA
|
A:CLA307
|
2.1
|
35.2
|
1.0
|
NC
|
A:CLA307
|
2.1
|
35.2
|
1.0
|
C4D
|
A:CLA307
|
2.9
|
35.2
|
1.0
|
C1B
|
A:CLA307
|
3.0
|
35.2
|
1.0
|
C4A
|
A:CLA307
|
3.0
|
35.2
|
1.0
|
C4B
|
A:CLA307
|
3.0
|
35.2
|
1.0
|
OE2
|
A:GLU76
|
3.1
|
32.8
|
1.0
|
C1C
|
A:CLA307
|
3.1
|
35.2
|
1.0
|
C4C
|
A:CLA307
|
3.1
|
35.2
|
1.0
|
C1A
|
A:CLA307
|
3.1
|
35.2
|
1.0
|
C1D
|
A:CLA307
|
3.1
|
35.2
|
1.0
|
CD
|
A:GLU76
|
3.3
|
32.8
|
1.0
|
CHB
|
A:CLA307
|
3.4
|
35.2
|
1.0
|
CHC
|
A:CLA307
|
3.4
|
35.2
|
1.0
|
C37
|
A:DD6303
|
3.4
|
38.8
|
1.0
|
CHA
|
A:CLA307
|
3.4
|
35.2
|
1.0
|
OE1
|
A:GLU76
|
3.5
|
32.8
|
1.0
|
CHD
|
A:CLA307
|
3.5
|
35.2
|
1.0
|
CG
|
A:GLU76
|
4.2
|
32.8
|
1.0
|
NE
|
A:ARG182
|
4.2
|
40.2
|
1.0
|
C3D
|
A:CLA307
|
4.2
|
35.2
|
1.0
|
NH1
|
A:ARG182
|
4.3
|
40.2
|
1.0
|
C2B
|
A:CLA307
|
4.3
|
35.2
|
1.0
|
C3B
|
A:CLA307
|
4.3
|
35.2
|
1.0
|
C2C
|
A:CLA307
|
4.3
|
35.2
|
1.0
|
C3C
|
A:CLA307
|
4.3
|
35.2
|
1.0
|
C2D
|
A:CLA307
|
4.3
|
35.2
|
1.0
|
C3A
|
A:CLA307
|
4.4
|
35.2
|
1.0
|
CZ
|
A:ARG182
|
4.4
|
40.2
|
1.0
|
C2A
|
A:CLA307
|
4.4
|
35.2
|
1.0
|
O2A
|
A:CLA307
|
4.6
|
35.2
|
1.0
|
C36
|
A:DD6303
|
4.8
|
38.8
|
1.0
|
CBD
|
A:CLA307
|
4.9
|
35.2
|
1.0
|
CBA
|
A:CLA307
|
4.9
|
35.2
|
1.0
|
|
Magnesium binding site 4 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 4 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg308
b:50.3
occ:1.00
|
MG
|
A:CLA308
|
0.0
|
50.3
|
1.0
|
NB
|
A:CLA308
|
2.0
|
50.3
|
1.0
|
ND
|
A:CLA308
|
2.0
|
50.3
|
1.0
|
NC
|
A:CLA308
|
2.1
|
50.3
|
1.0
|
NA
|
A:CLA308
|
2.1
|
50.3
|
1.0
|
C4D
|
A:CLA308
|
2.9
|
50.3
|
1.0
|
C1B
|
A:CLA308
|
3.0
|
50.3
|
1.0
|
C4A
|
A:CLA308
|
3.0
|
50.3
|
1.0
|
C4B
|
A:CLA308
|
3.1
|
50.3
|
1.0
|
C1C
|
A:CLA308
|
3.1
|
50.3
|
1.0
|
C4C
|
A:CLA308
|
3.1
|
50.3
|
1.0
|
C1A
|
A:CLA308
|
3.1
|
50.3
|
1.0
|
NE2
|
A:GLN93
|
3.1
|
57.9
|
1.0
|
C1D
|
A:CLA308
|
3.1
|
50.3
|
1.0
|
CHB
|
A:CLA308
|
3.4
|
50.3
|
1.0
|
CHC
|
A:CLA308
|
3.4
|
50.3
|
1.0
|
C2
|
A:CLA308
|
3.4
|
50.3
|
1.0
|
CHA
|
A:CLA308
|
3.5
|
50.3
|
1.0
|
CHD
|
A:CLA308
|
3.5
|
50.3
|
1.0
|
O2A
|
A:CLA308
|
3.8
|
50.3
|
1.0
|
C1
|
A:CLA308
|
4.0
|
50.3
|
1.0
|
CG
|
A:GLN93
|
4.1
|
57.9
|
1.0
|
CD
|
A:GLN93
|
4.1
|
57.9
|
1.0
|
C3D
|
A:CLA308
|
4.2
|
50.3
|
1.0
|
C2B
|
A:CLA308
|
4.3
|
50.3
|
1.0
|
C3B
|
A:CLA308
|
4.3
|
50.3
|
1.0
|
C2C
|
A:CLA308
|
4.3
|
50.3
|
1.0
|
C2D
|
A:CLA308
|
4.3
|
50.3
|
1.0
|
C3C
|
A:CLA308
|
4.4
|
50.3
|
1.0
|
C3A
|
A:CLA308
|
4.4
|
50.3
|
1.0
|
C3
|
A:CLA308
|
4.4
|
50.3
|
1.0
|
C2A
|
A:CLA308
|
4.4
|
50.3
|
1.0
|
C5
|
A:CLA308
|
4.6
|
50.3
|
1.0
|
C7
|
A:A86302
|
4.7
|
50.8
|
1.0
|
CA
|
A:GLY89
|
4.8
|
48.8
|
1.0
|
CGA
|
A:CLA308
|
4.8
|
50.3
|
1.0
|
CBD
|
A:CLA308
|
4.9
|
50.3
|
1.0
|
|
Magnesium binding site 5 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 5 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg309
b:54.5
occ:1.00
|
MG
|
A:CLA309
|
0.0
|
54.5
|
1.0
|
NB
|
A:CLA309
|
2.0
|
54.5
|
1.0
|
ND
|
A:CLA309
|
2.0
|
54.5
|
1.0
|
NC
|
A:CLA309
|
2.1
|
54.5
|
1.0
|
NA
|
A:CLA309
|
2.1
|
54.5
|
1.0
|
OE1
|
A:GLN121
|
2.4
|
51.5
|
1.0
|
C4D
|
A:CLA309
|
2.9
|
54.5
|
1.0
|
C1B
|
A:CLA309
|
3.0
|
54.5
|
1.0
|
C4A
|
A:CLA309
|
3.0
|
54.5
|
1.0
|
C4B
|
A:CLA309
|
3.1
|
54.5
|
1.0
|
C1C
|
A:CLA309
|
3.1
|
54.5
|
1.0
|
C4C
|
A:CLA309
|
3.1
|
54.5
|
1.0
|
C1D
|
A:CLA309
|
3.1
|
54.5
|
1.0
|
C1A
|
A:CLA309
|
3.2
|
54.5
|
1.0
|
CHB
|
A:CLA309
|
3.4
|
54.5
|
1.0
|
CHC
|
A:CLA309
|
3.4
|
54.5
|
1.0
|
CD
|
A:GLN121
|
3.5
|
51.5
|
1.0
|
CHA
|
A:CLA309
|
3.5
|
54.5
|
1.0
|
CHD
|
A:CLA309
|
3.5
|
54.5
|
1.0
|
NE2
|
A:GLN121
|
4.0
|
51.5
|
1.0
|
C3D
|
A:CLA309
|
4.2
|
54.5
|
1.0
|
C2B
|
A:CLA309
|
4.3
|
54.5
|
1.0
|
C3B
|
A:CLA309
|
4.3
|
54.5
|
1.0
|
C2C
|
A:CLA309
|
4.3
|
54.5
|
1.0
|
C2D
|
A:CLA309
|
4.3
|
54.5
|
1.0
|
C3C
|
A:CLA309
|
4.4
|
54.5
|
1.0
|
C3A
|
A:CLA309
|
4.4
|
54.5
|
1.0
|
C2A
|
A:CLA309
|
4.5
|
54.5
|
1.0
|
CG
|
A:GLN121
|
4.6
|
51.5
|
1.0
|
CB
|
A:GLN121
|
4.8
|
51.5
|
1.0
|
CBD
|
A:CLA309
|
4.9
|
54.5
|
1.0
|
|
Magnesium binding site 6 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 6 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg310
b:32.0
occ:1.00
|
MG
|
A:CLA310
|
0.0
|
32.0
|
1.0
|
NB
|
A:CLA310
|
2.0
|
32.0
|
1.0
|
ND
|
A:CLA310
|
2.0
|
32.0
|
1.0
|
NA
|
A:CLA310
|
2.1
|
32.0
|
1.0
|
NC
|
A:CLA310
|
2.1
|
32.0
|
1.0
|
C4D
|
A:CLA310
|
2.9
|
32.0
|
1.0
|
C1B
|
A:CLA310
|
3.0
|
32.0
|
1.0
|
C4B
|
A:CLA310
|
3.0
|
32.0
|
1.0
|
C4A
|
A:CLA310
|
3.0
|
32.0
|
1.0
|
C1C
|
A:CLA310
|
3.1
|
32.0
|
1.0
|
C1D
|
A:CLA310
|
3.1
|
32.0
|
1.0
|
C4C
|
A:CLA310
|
3.1
|
32.0
|
1.0
|
C1A
|
A:CLA310
|
3.2
|
32.0
|
1.0
|
CHB
|
A:CLA310
|
3.4
|
32.0
|
1.0
|
CHC
|
A:CLA310
|
3.4
|
32.0
|
1.0
|
CHA
|
A:CLA310
|
3.5
|
32.0
|
1.0
|
CHD
|
A:CLA310
|
3.5
|
32.0
|
1.0
|
C2B
|
A:CLA310
|
4.2
|
32.0
|
1.0
|
C3D
|
A:CLA310
|
4.2
|
32.0
|
1.0
|
C3B
|
A:CLA310
|
4.2
|
32.0
|
1.0
|
C2D
|
A:CLA310
|
4.3
|
32.0
|
1.0
|
C9
|
f:CLA804
|
4.3
|
20.0
|
1.0
|
CMD
|
j:CLA101
|
4.3
|
31.0
|
1.0
|
C2C
|
A:CLA310
|
4.3
|
32.0
|
1.0
|
C3C
|
A:CLA310
|
4.4
|
32.0
|
1.0
|
C3A
|
A:CLA310
|
4.4
|
32.0
|
1.0
|
C2A
|
A:CLA310
|
4.5
|
32.0
|
1.0
|
CG
|
A:GLU130
|
4.7
|
42.1
|
1.0
|
C11
|
f:CLA804
|
4.8
|
20.0
|
1.0
|
NZ
|
A:LYS78
|
4.8
|
31.8
|
1.0
|
CD
|
A:GLU130
|
4.9
|
42.1
|
1.0
|
CBD
|
A:CLA310
|
4.9
|
32.0
|
1.0
|
|
Magnesium binding site 7 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 7 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg311
b:43.8
occ:1.00
|
MG
|
A:CLA311
|
0.0
|
43.8
|
1.0
|
NB
|
A:CLA311
|
2.0
|
43.8
|
1.0
|
ND
|
A:CLA311
|
2.0
|
43.8
|
1.0
|
NC
|
A:CLA311
|
2.1
|
43.8
|
1.0
|
NA
|
A:CLA311
|
2.1
|
43.8
|
1.0
|
C4D
|
A:CLA311
|
2.9
|
43.8
|
1.0
|
C1B
|
A:CLA311
|
3.0
|
43.8
|
1.0
|
C4A
|
A:CLA311
|
3.0
|
43.8
|
1.0
|
C4B
|
A:CLA311
|
3.0
|
43.8
|
1.0
|
C1C
|
A:CLA311
|
3.1
|
43.8
|
1.0
|
OE2
|
A:GLU177
|
3.1
|
42.8
|
1.0
|
C4C
|
A:CLA311
|
3.1
|
43.8
|
1.0
|
C1D
|
A:CLA311
|
3.1
|
43.8
|
1.0
|
C1A
|
A:CLA311
|
3.1
|
43.8
|
1.0
|
CD
|
A:GLU177
|
3.3
|
42.8
|
1.0
|
CHB
|
A:CLA311
|
3.4
|
43.8
|
1.0
|
CHC
|
A:CLA311
|
3.4
|
43.8
|
1.0
|
C37
|
A:DD6304
|
3.4
|
30.0
|
1.0
|
CHA
|
A:CLA311
|
3.5
|
43.8
|
1.0
|
OE1
|
A:GLU177
|
3.5
|
42.8
|
1.0
|
CHD
|
A:CLA311
|
3.5
|
43.8
|
1.0
|
CG
|
A:GLU177
|
4.2
|
42.8
|
1.0
|
C3D
|
A:CLA311
|
4.2
|
43.8
|
1.0
|
C2B
|
A:CLA311
|
4.3
|
43.8
|
1.0
|
NE
|
A:ARG81
|
4.3
|
38.4
|
1.0
|
C3B
|
A:CLA311
|
4.3
|
43.8
|
1.0
|
NH2
|
A:ARG81
|
4.3
|
38.4
|
1.0
|
C2D
|
A:CLA311
|
4.3
|
43.8
|
1.0
|
C2C
|
A:CLA311
|
4.3
|
43.8
|
1.0
|
C3C
|
A:CLA311
|
4.3
|
43.8
|
1.0
|
C3A
|
A:CLA311
|
4.4
|
43.8
|
1.0
|
C2A
|
A:CLA311
|
4.4
|
43.8
|
1.0
|
CZ
|
A:ARG81
|
4.5
|
38.4
|
1.0
|
C36
|
A:DD6304
|
4.8
|
30.0
|
1.0
|
CBD
|
A:CLA311
|
4.9
|
43.8
|
1.0
|
CB
|
A:GLU177
|
5.0
|
42.8
|
1.0
|
|
Magnesium binding site 8 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 8 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg312
b:48.4
occ:1.00
|
MG
|
A:KC1312
|
0.0
|
48.4
|
1.0
|
NC
|
A:KC1312
|
2.0
|
48.4
|
1.0
|
NB
|
A:KC1312
|
2.1
|
48.4
|
1.0
|
ND
|
A:KC1312
|
2.1
|
48.4
|
1.0
|
NA
|
A:KC1312
|
2.1
|
48.4
|
1.0
|
C4D
|
A:KC1312
|
2.9
|
48.4
|
1.0
|
C4C
|
A:KC1312
|
2.9
|
48.4
|
1.0
|
C4A
|
A:KC1312
|
3.0
|
48.4
|
1.0
|
C1B
|
A:KC1312
|
3.0
|
48.4
|
1.0
|
C4B
|
A:KC1312
|
3.1
|
48.4
|
1.0
|
OD1
|
A:ASN180
|
3.2
|
45.3
|
1.0
|
C1D
|
A:KC1312
|
3.2
|
48.4
|
1.0
|
C1C
|
A:KC1312
|
3.3
|
48.4
|
1.0
|
C10
|
A:CLA306
|
3.3
|
53.5
|
1.0
|
CHA
|
A:KC1312
|
3.3
|
48.4
|
1.0
|
C1A
|
A:KC1312
|
3.4
|
48.4
|
1.0
|
CHB
|
A:KC1312
|
3.4
|
48.4
|
1.0
|
CHD
|
A:KC1312
|
3.5
|
48.4
|
1.0
|
C7
|
A:CLA306
|
3.5
|
53.5
|
1.0
|
C8
|
A:CLA306
|
3.7
|
53.5
|
1.0
|
CHC
|
A:KC1312
|
3.7
|
48.4
|
1.0
|
CG
|
A:ASN180
|
3.8
|
45.3
|
1.0
|
C9
|
A:CLA306
|
3.8
|
53.5
|
1.0
|
ND2
|
A:ASN180
|
4.1
|
45.3
|
1.0
|
C3D
|
A:KC1312
|
4.2
|
48.4
|
1.0
|
C3C
|
A:KC1312
|
4.3
|
48.4
|
1.0
|
C2B
|
A:KC1312
|
4.3
|
48.4
|
1.0
|
C3A
|
A:KC1312
|
4.3
|
48.4
|
1.0
|
C2D
|
A:KC1312
|
4.3
|
48.4
|
1.0
|
C3B
|
A:KC1312
|
4.4
|
48.4
|
1.0
|
C2C
|
A:KC1312
|
4.4
|
48.4
|
1.0
|
C11
|
A:CLA306
|
4.6
|
53.5
|
1.0
|
C2A
|
A:KC1312
|
4.6
|
48.4
|
1.0
|
CBD
|
A:KC1312
|
4.8
|
48.4
|
1.0
|
CB
|
A:ASN180
|
4.9
|
45.3
|
1.0
|
C6
|
A:CLA306
|
5.0
|
53.5
|
1.0
|
|
Magnesium binding site 9 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 9 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg313
b:60.7
occ:1.00
|
MG
|
A:CLA313
|
0.0
|
60.7
|
1.0
|
NB
|
A:CLA313
|
2.0
|
60.7
|
1.0
|
ND
|
A:CLA313
|
2.0
|
60.7
|
1.0
|
NC
|
A:CLA313
|
2.1
|
60.7
|
1.0
|
NA
|
A:CLA313
|
2.1
|
60.7
|
1.0
|
C4D
|
A:CLA313
|
2.9
|
60.7
|
1.0
|
C1B
|
A:CLA313
|
3.0
|
60.7
|
1.0
|
C4A
|
A:CLA313
|
3.0
|
60.7
|
1.0
|
C4B
|
A:CLA313
|
3.1
|
60.7
|
1.0
|
C1C
|
A:CLA313
|
3.1
|
60.7
|
1.0
|
C4C
|
A:CLA313
|
3.1
|
60.7
|
1.0
|
C1D
|
A:CLA313
|
3.1
|
60.7
|
1.0
|
C1A
|
A:CLA313
|
3.2
|
60.7
|
1.0
|
CHB
|
A:CLA313
|
3.4
|
60.7
|
1.0
|
CHC
|
A:CLA313
|
3.5
|
60.7
|
1.0
|
CHA
|
A:CLA313
|
3.5
|
60.7
|
1.0
|
CHD
|
A:CLA313
|
3.5
|
60.7
|
1.0
|
CMB
|
D:CLA311
|
3.7
|
61.2
|
1.0
|
C3D
|
A:CLA313
|
4.3
|
60.7
|
1.0
|
C2B
|
A:CLA313
|
4.3
|
60.7
|
1.0
|
C3B
|
A:CLA313
|
4.3
|
60.7
|
1.0
|
C2C
|
A:CLA313
|
4.3
|
60.7
|
1.0
|
C3C
|
A:CLA313
|
4.3
|
60.7
|
1.0
|
C2D
|
A:CLA313
|
4.3
|
60.7
|
1.0
|
C3A
|
A:CLA313
|
4.4
|
60.7
|
1.0
|
C2A
|
A:CLA313
|
4.5
|
60.7
|
1.0
|
CA
|
A:GLY190
|
4.6
|
60.7
|
1.0
|
CBD
|
A:CLA313
|
4.9
|
60.7
|
1.0
|
|
Magnesium binding site 10 out
of 360 in 6ly5
Go back to
Magnesium Binding Sites List in 6ly5
Magnesium binding site 10 out
of 360 in the Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Organization and Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg314
b:68.7
occ:1.00
|
MG
|
A:CLA314
|
0.0
|
68.7
|
1.0
|
NB
|
A:CLA314
|
2.0
|
68.7
|
1.0
|
ND
|
A:CLA314
|
2.0
|
68.7
|
1.0
|
NA
|
A:CLA314
|
2.1
|
68.7
|
1.0
|
NC
|
A:CLA314
|
2.1
|
68.7
|
1.0
|
NE2
|
A:HIS193
|
2.9
|
70.8
|
1.0
|
C4D
|
A:CLA314
|
3.0
|
68.7
|
1.0
|
C4A
|
A:CLA314
|
3.0
|
68.7
|
1.0
|
C1B
|
A:CLA314
|
3.0
|
68.7
|
1.0
|
C4B
|
A:CLA314
|
3.1
|
68.7
|
1.0
|
C1C
|
A:CLA314
|
3.1
|
68.7
|
1.0
|
C4C
|
A:CLA314
|
3.1
|
68.7
|
1.0
|
C1D
|
A:CLA314
|
3.1
|
68.7
|
1.0
|
C1A
|
A:CLA314
|
3.2
|
68.7
|
1.0
|
CHB
|
A:CLA314
|
3.4
|
68.7
|
1.0
|
CHC
|
A:CLA314
|
3.5
|
68.7
|
1.0
|
CE1
|
A:HIS193
|
3.5
|
70.8
|
1.0
|
CHD
|
A:CLA314
|
3.5
|
68.7
|
1.0
|
CHA
|
A:CLA314
|
3.5
|
68.7
|
1.0
|
CD2
|
A:HIS193
|
4.0
|
70.8
|
1.0
|
C2B
|
A:CLA314
|
4.3
|
68.7
|
1.0
|
C3D
|
A:CLA314
|
4.3
|
68.7
|
1.0
|
C3B
|
A:CLA314
|
4.3
|
68.7
|
1.0
|
C2C
|
A:CLA314
|
4.3
|
68.7
|
1.0
|
C3C
|
A:CLA314
|
4.3
|
68.7
|
1.0
|
C2D
|
A:CLA314
|
4.4
|
68.7
|
1.0
|
C3A
|
A:CLA314
|
4.4
|
68.7
|
1.0
|
C2A
|
A:CLA314
|
4.4
|
68.7
|
1.0
|
ND1
|
A:HIS193
|
4.7
|
70.8
|
1.0
|
CBD
|
A:CLA314
|
5.0
|
68.7
|
1.0
|
CG
|
A:HIS193
|
5.0
|
70.8
|
1.0
|
|
Reference:
C.Xu,
X.Pi,
Y.Huang,
G.Han,
X.Chen,
X.Qin,
G.Huang,
S.Zhao,
Y.Yang,
T.Kuang,
W.Wang,
S.F.Sui,
J.R.Shen.
Structural Basis For Energy Transfer in A Huge Diatom Psi-Fcpi Supercomplex. Nat Commun V. 11 5081 2020.
ISSN: ESSN 2041-1723
PubMed: 33033236
DOI: 10.1038/S41467-020-18867-X
Page generated: Tue Oct 1 10:47:59 2024
|