Magnesium in PDB 6lzq: Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose.

The structure of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose., PDB code: 6lzq was solved by Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.53 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.833, 56.838, 81.864, 90, 99.4, 90
R / Rfree (%)	16.4 / 20.6

The structure of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose. also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Magnesium atom in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose. (pdb code 6lzq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose., PDB code: 6lzq:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg609 b:11.4 occ:1.00 O A:HOH977 2.2 35.1 1.0 OD1 A:ASN190 2.3 27.3 1.0 O A:LEU524 2.3 19.6 1.0 O A:HOH714 2.4 24.6 1.0 O A:HOH744 2.4 26.4 1.0 O A:ASN190 2.4 20.8 1.0 O1 A:EDO606 2.5 32.4 1.0 O2 A:EDO606 2.5 36.2 1.0 C1 A:EDO606 3.1 46.8 1.0 C2 A:EDO606 3.4 41.1 1.0 CG A:ASN190 3.4 19.2 1.0 C A:ASN190 3.5 24.8 1.0 C A:LEU524 3.5 19.1 1.0 CA A:ASN190 3.9 21.8 1.0 OD2 A:ASP192 4.1 39.6 1.0 CB A:ASN190 4.2 23.1 1.0 CA A:ASP525 4.3 17.1 1.0 ND2 A:ASN190 4.4 21.9 1.0 N A:ASP525 4.4 15.0 1.0 OD1 A:ASP525 4.5 19.2 1.0 CA A:LEU524 4.5 14.8 1.0 O A:HOH731 4.6 18.6 1.0 N A:LEU191 4.6 18.6 1.0 CB A:LEU524 4.7 15.8 1.0 NZ A:LYS527 4.7 48.2 1.0 C A:ASP525 5.0 15.6 1.0

Magnesium binding site 2 out of 3 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg610 b:20.9 occ:1.00 O A:HOH701 2.1 34.0 1.0 O2 A:EDO603 2.2 31.4 1.0 O A:HOH824 2.2 27.2 1.0 O1 A:EDO603 2.4 33.6 1.0 O A:HOH782 2.5 29.0 1.0 O A:HOH775 2.8 28.1 1.0 C2 A:EDO603 3.2 30.6 1.0 C1 A:EDO603 3.2 29.8 1.0 NE2 A:GLN175 3.9 26.3 1.0 NZ A:LYS210 4.0 26.5 1.0 O A:GLN200 4.3 15.9 1.0 O2 A:EDO608 4.5 35.3 1.0 CB A:GLN175 4.7 23.5 1.0 O A:GLN175 4.7 17.9 1.0 CD A:GLN175 4.8 32.5 1.0 OE1 A:GLN200 5.0 24.4 1.0

Magnesium binding site 3 out of 3 in the Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Chitin-Specific Solute Binding Protein From Vibrio Harveyi in Complex with Chitotriose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg611 b:22.4 occ:1.00 O A:HOH834 2.1 28.8 1.0 O A:ALA188 2.2 23.7 1.0 O A:HOH842 2.3 34.6 1.0 O A:HOH853 2.4 35.0 1.0 O A:LEU191 2.5 20.8 1.0 C A:ALA188 3.3 22.5 1.0 C A:LEU191 3.6 23.8 1.0 N A:LEU191 4.1 18.6 1.0 CA A:ALA189 4.1 25.2 1.0 N A:ALA189 4.2 21.9 1.0 O A:HOH846 4.2 32.3 1.0 C A:ALA189 4.2 25.9 1.0 CA A:LEU191 4.2 20.2 1.0 CA A:ALA188 4.3 18.3 1.0 O A:ALA189 4.4 25.4 1.0 CB A:LEU191 4.4 19.2 1.0 CB A:ALA188 4.6 23.4 1.0 OD1 A:ASP192 4.6 36.8 1.0 N A:ASP192 4.7 19.8 1.0 N A:ASN190 4.7 19.5 1.0 OE2 A:GLU181 4.9 32.1 1.0 CA A:ASP192 4.9 20.0 1.0

Y.Kitaoku, P.Ubonbal, L.T.Tran, R.C.Robinson, W.Suginta. Structural Insight Into Chitin-Specific Solute-Binding Protein From Vibrio Harveyi To Be Published.