Magnesium in PDB 6m0d: Beijerinckia Indica Beta-Fructosyltransferase

All present enzymatic activity of Beijerinckia Indica Beta-Fructosyltransferase:
2.4.1.10;

The structure of Beijerinckia Indica Beta-Fructosyltransferase, PDB code: 6m0d was solved by T.Tonozuka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.30 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.891, 80.900, 92.661, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 26.6

The binding sites of Magnesium atom in the Beijerinckia Indica Beta-Fructosyltransferase (pdb code 6m0d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Beijerinckia Indica Beta-Fructosyltransferase, PDB code: 6m0d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Beijerinckia Indica Beta-Fructosyltransferase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Beijerinckia Indica Beta-Fructosyltransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:38.3 occ:1.00 O A:HOH738 2.0 26.9 1.0 O A:VAL403 4.2 32.3 1.0 O A:ARG396 4.3 21.4 1.0 OD1 A:ASP404 4.3 37.7 1.0 O A:TYR399 4.4 25.6 1.0 CG A:ASP404 4.5 36.2 1.0 CB A:TYR399 4.6 26.7 1.0 OD2 A:ASP404 4.6 37.1 1.0 O A:ALA400 5.0 27.0 1.0

Magnesium binding site 2 out of 2 in the Beijerinckia Indica Beta-Fructosyltransferase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Beijerinckia Indica Beta-Fructosyltransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:18.9 occ:1.00 OD2 A:ASP171 2.3 35.5 1.0 O A:HOH745 2.4 34.6 1.0 CG A:ASP171 3.1 38.3 1.0 OD1 A:ASP171 3.2 35.0 1.0 O A:HOH763 4.4 22.6 1.0 CB A:ASP171 4.6 37.5 1.0

T.Tonozuka, J.Kitamura, M.Nagaya, R.Kawai, A.Nishikawa, K.Hirano, K.Tamura, T.Fujii, T.Tochio. Crystal Structure of A Glycoside Hydrolase Family 68 Beta-Fructosyltransferase From Beijerinckia Indica Subsp. Indica in Complex with Fructose. Biosci.Biotechnol.Biochem. V. 84 2508 2020.
ISSN: ISSN 0916-8451
PubMed: 32752982
DOI: 10.1080/09168451.2020.1804317