Magnesium in PDB 6m2y: Crystal Structure of A Formolase, Bfd Variant M6 From Pseudomonas Putida

All present enzymatic activity of Crystal Structure of A Formolase, Bfd Variant M6 From Pseudomonas Putida:
4.1.1.7;

The structure of Crystal Structure of A Formolase, Bfd Variant M6 From Pseudomonas Putida, PDB code: 6m2y was solved by H.L.Wei, W.D.Liu, T.Z.Li, L.L.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.60 / 2.10
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	103.515, 106.674, 116.548, 90, 90, 90
R / Rfree (%)	15.4 / 18.9

The binding sites of Magnesium atom in the Crystal Structure of A Formolase, Bfd Variant M6 From Pseudomonas Putida (pdb code 6m2y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Formolase, Bfd Variant M6 From Pseudomonas Putida, PDB code: 6m2y:

Magnesium binding site 1 out of 1 in the Crystal Structure of A Formolase, Bfd Variant M6 From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Formolase, Bfd Variant M6 From Pseudomonas Putida within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:13.8 occ:1.00 O A:HOH819 2.1 14.3 1.0 OD1 A:ASN455 2.1 17.5 1.0 O2B A:TPP601 2.2 16.2 1.0 O2A A:TPP601 2.2 15.8 1.0 OD1 A:ASP428 2.2 16.6 1.0 O A:THR457 2.2 14.8 1.0 CG A:ASN455 3.1 19.0 1.0 PA A:TPP601 3.4 20.2 1.0 CG A:ASP428 3.4 18.3 1.0 ND2 A:ASN455 3.4 20.5 1.0 PB A:TPP601 3.5 20.6 1.0 C A:THR457 3.5 15.8 1.0 O3A A:TPP601 3.6 18.5 1.0 OD2 A:ASP428 4.1 19.5 1.0 N A:THR457 4.1 16.0 1.0 O7 A:TPP601 4.3 20.2 1.0 N A:ASP428 4.3 14.8 1.0 O1B A:TPP601 4.4 19.0 1.0 CA A:THR457 4.4 16.4 1.0 N A:GLY459 4.4 15.9 1.0 N A:TYR458 4.5 15.4 1.0 CB A:ASN455 4.5 18.6 1.0 N A:GLY429 4.5 16.4 1.0 O1A A:TPP601 4.6 18.6 1.0 CB A:ASP428 4.6 17.5 1.0 O3B A:TPP601 4.6 18.8 1.0 O A:MET453 4.6 15.2 1.0 O A:HOH733 4.6 21.2 1.0 N A:ASN455 4.7 17.6 1.0 CA A:TYR458 4.8 15.7 1.0 CA A:ASP428 4.8 16.5 1.0 CG2 A:THR457 4.9 17.9 1.0 N A:GLY456 4.9 17.3 1.0 CA A:ASN455 4.9 18.6 1.0

T.Li, Z.Tang, H.Wei, Z.Tan, P.Liu, J.Li, Y.Zheng, J.Lin, W.Liu, H.Jiang, H.Liu, L.Zhu, Y.Ma. Totally Atom-Economical Synthesis of Lactic Acid From Formaldehyde: Combined Bio-Carboligation and Chemo-Rearrangement Without the Isolation of Intermediate. Green Chem V. 22 6809 2020.
ISSN: ISSN 1463-9262
DOI: 10.1039/D0GC02433C