Magnesium in PDB 6m3t: Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212

The structure of Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212, PDB code: 6m3t was solved by K.H.Park, E.J.Woo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.25 / 2.38
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	68.594, 68.594, 251.321, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 24.4

The binding sites of Magnesium atom in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212 (pdb code 6m3t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212, PDB code: 6m3t:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:46.6 occ:1.00 OD1 A:ASN169 2.5 28.0 1.0 O A:HOH431 2.7 20.5 1.0 OE1 A:GLN164 2.8 33.2 1.0 N A:ALA138 3.5 19.9 1.0 O A:ALA138 3.5 19.1 1.0 O A:HOH462 3.5 25.2 1.0 CA A:GLY137 3.5 21.5 1.0 CG A:ASN169 3.6 28.0 1.0 C A:GLY137 3.7 22.1 1.0 CD A:GLN164 3.8 32.5 1.0 OE1 A:GLU177 3.8 21.2 1.0 CD1 A:TRP173 3.9 19.3 1.0 NE2 A:GLN164 4.3 32.3 1.0 C A:ALA138 4.3 18.8 1.0 CB A:ASN169 4.4 27.7 1.0 CA A:ALA138 4.4 20.1 1.0 CA A:ASN169 4.5 26.5 1.0 O A:ASN169 4.5 26.7 1.0 ND2 A:ASN169 4.6 28.6 1.0 O A:GLY137 4.6 21.2 1.0 NE1 A:TRP173 4.6 19.8 1.0 CD A:GLU177 4.7 21.8 1.0 N A:GLY137 4.9 23.2 1.0 OE2 A:GLU177 4.9 21.9 1.0 CG A:TRP173 4.9 19.2 1.0 CG A:GLN164 4.9 30.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Mouse Endonuclease Endog(H138A/C110A), Space Group P41212 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:58.3 occ:1.00 ND2 B:ASN169 3.1 17.8 1.0 O B:HOH421 3.1 15.5 1.0 N B:ALA138 3.1 13.9 1.0 O B:HOH475 3.4 21.7 1.0 O B:ARG136 3.5 19.9 1.0 CA B:GLY137 3.7 15.4 1.0 OD1 B:ASN169 3.8 17.7 1.0 CG B:ASN169 3.8 18.1 1.0 C B:GLY137 3.9 15.8 1.0 CB B:ALA138 3.9 14.2 1.0 CA B:ALA138 4.1 16.2 1.0 C B:ARG136 4.4 18.8 1.0 O B:ALA138 4.5 17.6 1.0 N B:GLY137 4.5 16.1 1.0 C B:ALA138 4.8 16.4 1.0

K.H.Park, S.M.Yoon, H.N.Song, J.H.Yang, S.E.Ryu, E.J.Woo. Crystal Structure of the Mouse Endonuclease G. Biochem.Biophys.Res.Commun. V. 526 35 2020.
ISSN: ESSN 1090-2104
PubMed: 32192768
DOI: 10.1016/J.BBRC.2020.03.060