Magnesium in PDB 6m5v: The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3

The structure of The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 (pdb code 6m5v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3, PDB code: 6m5v:

Magnesium binding site 1 out of 1 in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:53.4 occ:1.00 NH1 A:ARG261 3.5 61.8 1.0 CZ A:ARG261 4.5 61.8 1.0 F3 A:BEF802 4.6 58.9 1.0 NH2 A:ARG261 4.7 61.8 1.0 O1A A:ADP801 4.8 64.4 1.0 O1B A:ADP801 4.9 64.4 1.0 BE A:BEF802 4.9 58.9 1.0 O3B A:ADP801 5.0 64.4 1.0

Y.Yang, P.Yang, N.Wang, Z.Chen, D.Su, Z.H.Zhou, Z.Rao, X.Wang. Architecture of the Herpesvirus Genome-Packaging Complex and Implications For Dna Translocation. Protein Cell V. 11 339 2020.
ISSN: ESSN 1674-8018
PubMed: 32328903
DOI: 10.1007/S13238-020-00710-0