Magnesium in PDB 6mal: Structure of Human Nocturnin C-Terminal Domain

All present enzymatic activity of Structure of Human Nocturnin C-Terminal Domain:
3.1.13.4;

The structure of Structure of Human Nocturnin C-Terminal Domain, PDB code: 6mal was solved by M.A.Estrella, J.Du, A.Korennykh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.94 / 2.60
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	61.400, 61.400, 155.300, 90.00, 90.00, 90.00
R / Rfree (%)	25.2 / 30.7

The binding sites of Magnesium atom in the Structure of Human Nocturnin C-Terminal Domain (pdb code 6mal). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Human Nocturnin C-Terminal Domain, PDB code: 6mal:

Magnesium binding site 1 out of 1 in the Structure of Human Nocturnin C-Terminal Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Human Nocturnin C-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:36.1 occ:1.00 OE2 A:GLU195 2.4 28.3 1.0 CD A:GLU195 3.2 26.4 1.0 OE1 A:GLU195 3.3 27.3 1.0 NE2 A:HIS414 3.8 26.2 1.0 OD2 A:ASP413 3.8 32.3 1.0 ND2 A:ASN149 4.0 41.3 1.0 OD1 A:ASN149 4.0 22.9 1.0 OD1 A:ASP413 4.0 35.9 1.0 OD1 A:ASP160 4.1 55.8 1.0 CD2 A:HIS414 4.2 25.1 1.0 CG A:ASN149 4.3 39.4 1.0 CD1 A:LEU151 4.3 25.2 1.0 CG A:ASP413 4.4 34.7 1.0 OD2 A:ASP160 4.6 56.6 1.0 CG A:GLU195 4.6 27.6 1.0 CG A:ASP160 4.8 55.9 1.0

M.A.Estrella, J.Du, A.Korennykh. Crystal Structure of Human Nocturnin Catalytic Domain. Sci Rep V. 8 16294 2018.
ISSN: ESSN 2045-2322
PubMed: 30389976
DOI: 10.1038/S41598-018-34615-0