Magnesium in PDB 6mbg: Gphf Dehydratase P1711L Variant For Improved Crystallization

The structure of Gphf Dehydratase P1711L Variant For Improved Crystallization, PDB code: 6mbg was solved by G.J.Dodge, J.L.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.08 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.398, 71.658, 78.122, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 21

The binding sites of Magnesium atom in the Gphf Dehydratase P1711L Variant For Improved Crystallization (pdb code 6mbg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Gphf Dehydratase P1711L Variant For Improved Crystallization, PDB code: 6mbg:

Magnesium binding site 1 out of 1 in the Gphf Dehydratase P1711L Variant For Improved Crystallization


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gphf Dehydratase P1711L Variant For Improved Crystallization within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2004 b:23.6 occ:1.00 O A:HOH2216 2.8 65.1 1.0 O A:HOH2180 3.1 27.8 1.0 N A:GLY1745 3.2 21.4 1.0 O A:HOH2192 3.2 24.0 1.0 O5 A:BU12003 3.3 32.5 1.0 CD A:PRO1920 3.6 30.2 1.0 CD2 A:LEU1744 3.7 22.7 1.0 CA A:LEU1744 3.8 20.7 1.0 C1 A:BU12003 3.8 45.3 1.0 C A:LEU1744 4.0 19.8 1.0 CA A:GLY1745 4.1 25.0 1.0 CG1 A:VAL1919 4.1 35.8 1.0 CG A:PRO1920 4.2 26.7 1.0 CB A:LEU1744 4.4 24.0 1.0 O A:HOH2258 4.4 44.3 1.0 O A:VAL1743 4.5 22.7 1.0 O A:HOH2256 4.6 39.1 1.0 CE1 A:HIS1735 4.6 28.4 1.0 O A:HOH2194 4.6 21.9 1.0 C2 A:BU12003 4.6 49.0 1.0 CG A:LEU1744 4.7 22.6 1.0 N A:PRO1920 4.7 27.2 1.0 N A:LEU1744 5.0 19.4 1.0

G.J.Dodge, D.Ronnow, R.E.Taylor, J.L.Smith. Molecular Basis For Olefin Rearrangement in the Gephyronic Acid Polyketide Synthase. Acs Chem. Biol. V. 13 2699 2018.
ISSN: ESSN 1554-8937
PubMed: 30179448
DOI: 10.1021/ACSCHEMBIO.8B00645