Magnesium in PDB 6mez: X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
Protein crystallography data
The structure of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii, PDB code: 6mez
was solved by
B.Selvaraj,
X.Lu,
M.J.Cuneo,
D.A.A.Myles,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.65 /
1.74
|
|
Space group
|
H 3
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.638,
83.638,
294.781,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
13.2 /
15.9
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Magnesium atom in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
(pdb code 6mez). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the
X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii, PDB code: 6mez:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 1 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:14.9
occ:1.00
|
MG
|
A:BCL401
|
0.0
|
14.9
|
1.0
|
|
ND
|
A:BCL401
|
2.0
|
13.8
|
1.0
|
|
NB
|
A:BCL401
|
2.1
|
12.9
|
1.0
|
|
NC
|
A:BCL401
|
2.1
|
15.3
|
1.0
|
|
NA
|
A:BCL401
|
2.2
|
14.2
|
1.0
|
|
NE2
|
A:HIS110
|
2.4
|
18.0
|
1.0
|
|
C4D
|
A:BCL401
|
3.0
|
13.1
|
1.0
|
|
C4B
|
A:BCL401
|
3.1
|
14.0
|
1.0
|
|
C1B
|
A:BCL401
|
3.1
|
13.7
|
1.0
|
|
C1C
|
A:BCL401
|
3.1
|
13.9
|
1.0
|
|
C1D
|
A:BCL401
|
3.1
|
15.0
|
1.0
|
|
C4A
|
A:BCL401
|
3.2
|
15.0
|
1.0
|
|
C4C
|
A:BCL401
|
3.2
|
16.0
|
1.0
|
|
CE1
|
A:HIS110
|
3.2
|
23.4
|
1.0
|
|
C1A
|
A:BCL401
|
3.2
|
15.0
|
1.0
|
|
CHC
|
A:BCL401
|
3.4
|
14.6
|
1.0
|
|
CHB
|
A:BCL401
|
3.4
|
15.1
|
1.0
|
|
CD2
|
A:HIS110
|
3.4
|
17.7
|
1.0
|
|
CHA
|
A:BCL401
|
3.4
|
11.5
|
1.0
|
|
CHD
|
A:BCL401
|
3.5
|
13.4
|
1.0
|
|
C3
|
A:BCL401
|
3.9
|
16.8
|
1.0
|
|
C2
|
A:BCL401
|
4.0
|
16.8
|
1.0
|
|
C3D
|
A:BCL401
|
4.2
|
13.0
|
1.0
|
|
C2B
|
A:BCL401
|
4.3
|
11.9
|
1.0
|
|
C5
|
A:BCL401
|
4.3
|
15.1
|
1.0
|
|
C4
|
A:BCL401
|
4.3
|
16.9
|
1.0
|
|
C2D
|
A:BCL401
|
4.3
|
16.6
|
1.0
|
|
C3B
|
A:BCL401
|
4.3
|
14.2
|
1.0
|
|
ND1
|
A:HIS110
|
4.3
|
20.2
|
1.0
|
|
C1
|
A:BCL401
|
4.4
|
16.5
|
1.0
|
|
C2C
|
A:BCL401
|
4.4
|
12.2
|
1.0
|
|
C3C
|
A:BCL401
|
4.5
|
13.8
|
1.0
|
|
CG
|
A:HIS110
|
4.5
|
15.5
|
1.0
|
|
C3A
|
A:BCL401
|
4.5
|
12.4
|
1.0
|
|
C2A
|
A:BCL401
|
4.5
|
14.1
|
1.0
|
|
O2A
|
A:BCL401
|
4.7
|
18.4
|
1.0
|
|
CD2
|
A:LEU103
|
4.7
|
30.5
|
1.0
|
|
C6
|
A:BCL401
|
4.9
|
18.0
|
1.0
|
|
CBD
|
A:BCL401
|
4.9
|
13.4
|
1.0
|
|
Magnesium binding site 2 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 2 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:13.8
occ:1.00
|
MG
|
A:BCL402
|
0.0
|
13.8
|
1.0
|
|
ND
|
A:BCL402
|
2.0
|
14.3
|
1.0
|
|
NB
|
A:BCL402
|
2.1
|
11.6
|
1.0
|
|
NC
|
A:BCL402
|
2.1
|
12.5
|
1.0
|
|
NA
|
A:BCL402
|
2.2
|
12.9
|
1.0
|
|
O
|
A:HOH682
|
2.2
|
16.2
|
1.0
|
|
C4D
|
A:BCL402
|
3.0
|
13.4
|
1.0
|
|
C1B
|
A:BCL402
|
3.1
|
12.1
|
1.0
|
|
C4B
|
A:BCL402
|
3.1
|
15.1
|
1.0
|
|
C1C
|
A:BCL402
|
3.1
|
13.8
|
1.0
|
|
C1D
|
A:BCL402
|
3.2
|
13.8
|
1.0
|
|
C4A
|
A:BCL402
|
3.2
|
13.7
|
1.0
|
|
C4C
|
A:BCL402
|
3.2
|
12.1
|
1.0
|
|
C1A
|
A:BCL402
|
3.2
|
11.8
|
1.0
|
|
CHB
|
A:BCL402
|
3.4
|
13.3
|
1.0
|
|
CHC
|
A:BCL402
|
3.4
|
14.0
|
1.0
|
|
CHA
|
A:BCL402
|
3.5
|
13.4
|
1.0
|
|
CHD
|
A:BCL402
|
3.5
|
9.3
|
1.0
|
|
C12
|
A:BCL407
|
3.9
|
16.5
|
1.0
|
|
O
|
A:HOH704
|
4.1
|
20.5
|
1.0
|
|
C3D
|
A:BCL402
|
4.2
|
13.2
|
1.0
|
|
C2B
|
A:BCL402
|
4.3
|
12.9
|
1.0
|
|
C2D
|
A:BCL402
|
4.3
|
14.7
|
1.0
|
|
C3B
|
A:BCL402
|
4.3
|
14.4
|
1.0
|
|
O
|
A:HOH514
|
4.4
|
27.6
|
1.0
|
|
C2C
|
A:BCL402
|
4.5
|
12.3
|
1.0
|
|
C3C
|
A:BCL402
|
4.5
|
12.2
|
1.0
|
|
C3A
|
A:BCL402
|
4.5
|
12.2
|
1.0
|
|
C2A
|
A:BCL402
|
4.5
|
10.3
|
1.0
|
|
CG2
|
A:VAL74
|
4.6
|
14.8
|
1.0
|
|
C15
|
A:BCL407
|
4.6
|
31.1
|
1.0
|
|
C11
|
A:BCL407
|
4.7
|
18.2
|
1.0
|
|
C10
|
A:BCL407
|
4.7
|
14.8
|
1.0
|
|
OD1
|
A:ASN79
|
4.7
|
23.2
|
1.0
|
|
C13
|
A:BCL407
|
4.8
|
18.0
|
1.0
|
|
CBD
|
A:BCL402
|
4.9
|
11.4
|
1.0
|
|
C14
|
A:BCL407
|
5.0
|
17.9
|
1.0
|
|
Magnesium binding site 3 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 3 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:14.9
occ:1.00
|
MG
|
A:BCL403
|
0.0
|
14.9
|
1.0
|
|
ND
|
A:BCL403
|
2.0
|
16.9
|
1.0
|
|
NB
|
A:BCL403
|
2.1
|
12.1
|
1.0
|
|
NC
|
A:BCL403
|
2.1
|
14.3
|
1.0
|
|
NA
|
A:BCL403
|
2.2
|
13.6
|
1.0
|
|
NE2
|
A:HIS298
|
2.3
|
13.3
|
1.0
|
|
C4D
|
A:BCL403
|
3.0
|
13.7
|
1.0
|
|
C4B
|
A:BCL403
|
3.1
|
13.9
|
1.0
|
|
C1B
|
A:BCL403
|
3.1
|
16.1
|
1.0
|
|
C1C
|
A:BCL403
|
3.1
|
14.1
|
1.0
|
|
C1D
|
A:BCL403
|
3.1
|
12.9
|
1.0
|
|
C4A
|
A:BCL403
|
3.2
|
12.7
|
1.0
|
|
C4C
|
A:BCL403
|
3.2
|
11.3
|
1.0
|
|
C1A
|
A:BCL403
|
3.2
|
13.6
|
1.0
|
|
CE1
|
A:HIS298
|
3.3
|
14.5
|
1.0
|
|
CD2
|
A:HIS298
|
3.3
|
12.9
|
1.0
|
|
CHC
|
A:BCL403
|
3.4
|
15.3
|
1.0
|
|
CHB
|
A:BCL403
|
3.4
|
13.8
|
1.0
|
|
CHA
|
A:BCL403
|
3.4
|
13.2
|
1.0
|
|
CHD
|
A:BCL403
|
3.5
|
11.1
|
1.0
|
|
C3D
|
A:BCL403
|
4.2
|
13.2
|
1.0
|
|
C2B
|
A:BCL403
|
4.3
|
13.7
|
1.0
|
|
C3B
|
A:BCL403
|
4.3
|
13.0
|
1.0
|
|
C2D
|
A:BCL403
|
4.3
|
11.6
|
1.0
|
|
ND1
|
A:HIS298
|
4.4
|
14.5
|
1.0
|
|
C2C
|
A:BCL403
|
4.4
|
15.8
|
1.0
|
|
CG
|
A:HIS298
|
4.4
|
15.2
|
1.0
|
|
C3C
|
A:BCL403
|
4.5
|
15.1
|
1.0
|
|
C3A
|
A:BCL403
|
4.5
|
12.4
|
1.0
|
|
C2A
|
A:BCL403
|
4.5
|
11.8
|
1.0
|
|
CBC
|
A:BCL404
|
4.6
|
18.5
|
1.0
|
|
CD1
|
A:ILE265
|
4.8
|
20.1
|
1.0
|
|
CBD
|
A:BCL403
|
4.9
|
10.8
|
1.0
|
|
Magnesium binding site 4 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 4 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:15.6
occ:1.00
|
MG
|
A:BCL404
|
0.0
|
15.6
|
1.0
|
|
ND
|
A:BCL404
|
2.0
|
14.4
|
1.0
|
|
NB
|
A:BCL404
|
2.1
|
13.8
|
1.0
|
|
NC
|
A:BCL404
|
2.1
|
15.3
|
1.0
|
|
NA
|
A:BCL404
|
2.2
|
13.6
|
1.0
|
|
NE2
|
A:HIS290
|
2.3
|
13.6
|
1.0
|
|
C4D
|
A:BCL404
|
3.0
|
14.4
|
1.0
|
|
C1B
|
A:BCL404
|
3.1
|
12.8
|
1.0
|
|
C4B
|
A:BCL404
|
3.1
|
13.5
|
1.0
|
|
C1C
|
A:BCL404
|
3.1
|
14.5
|
1.0
|
|
CE1
|
A:HIS290
|
3.1
|
13.1
|
1.0
|
|
C4A
|
A:BCL404
|
3.1
|
12.6
|
1.0
|
|
C1D
|
A:BCL404
|
3.1
|
13.7
|
1.0
|
|
C4C
|
A:BCL404
|
3.1
|
15.1
|
1.0
|
|
C1A
|
A:BCL404
|
3.2
|
17.2
|
1.0
|
|
CD2
|
A:HIS290
|
3.3
|
13.3
|
1.0
|
|
CHB
|
A:BCL404
|
3.4
|
14.3
|
1.0
|
|
CHC
|
A:BCL404
|
3.4
|
13.9
|
1.0
|
|
CHA
|
A:BCL404
|
3.5
|
16.0
|
1.0
|
|
CHD
|
A:BCL404
|
3.5
|
12.5
|
1.0
|
|
C4
|
A:BCL404
|
4.2
|
14.2
|
1.0
|
|
C3D
|
A:BCL404
|
4.2
|
13.8
|
1.0
|
|
ND1
|
A:HIS290
|
4.2
|
12.0
|
1.0
|
|
C2B
|
A:BCL404
|
4.3
|
13.8
|
1.0
|
|
C2D
|
A:BCL404
|
4.3
|
14.1
|
1.0
|
|
C3B
|
A:BCL404
|
4.3
|
14.1
|
1.0
|
|
CG
|
A:HIS290
|
4.4
|
11.4
|
1.0
|
|
C3A
|
A:BCL404
|
4.4
|
15.3
|
1.0
|
|
C3C
|
A:BCL404
|
4.4
|
14.8
|
1.0
|
|
C2C
|
A:BCL404
|
4.4
|
14.6
|
1.0
|
|
C2A
|
A:BCL404
|
4.5
|
15.3
|
1.0
|
|
O2A
|
A:BCL404
|
4.6
|
19.2
|
1.0
|
|
C3
|
A:BCL404
|
4.8
|
15.6
|
1.0
|
|
C1
|
A:BCL404
|
4.9
|
21.6
|
1.0
|
|
CBD
|
A:BCL404
|
4.9
|
17.1
|
1.0
|
|
Magnesium binding site 5 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 5 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:15.0
occ:1.00
|
MG
|
A:BCL405
|
0.0
|
15.0
|
1.0
|
|
ND
|
A:BCL405
|
2.0
|
14.2
|
1.0
|
|
NB
|
A:BCL405
|
2.1
|
15.3
|
1.0
|
|
NC
|
A:BCL405
|
2.1
|
14.7
|
1.0
|
|
NA
|
A:BCL405
|
2.2
|
15.3
|
1.0
|
|
O
|
A:LEU242
|
2.2
|
15.5
|
1.0
|
|
C4D
|
A:BCL405
|
3.0
|
16.9
|
1.0
|
|
C4B
|
A:BCL405
|
3.1
|
17.6
|
1.0
|
|
C1B
|
A:BCL405
|
3.1
|
14.7
|
1.0
|
|
C1C
|
A:BCL405
|
3.1
|
16.7
|
1.0
|
|
C1D
|
A:BCL405
|
3.1
|
17.6
|
1.0
|
|
C4A
|
A:BCL405
|
3.1
|
18.0
|
1.0
|
|
C4C
|
A:BCL405
|
3.2
|
15.5
|
1.0
|
|
C1A
|
A:BCL405
|
3.2
|
13.3
|
1.0
|
|
C
|
A:LEU242
|
3.3
|
16.6
|
1.0
|
|
CHC
|
A:BCL405
|
3.4
|
16.1
|
1.0
|
|
CHB
|
A:BCL405
|
3.4
|
16.2
|
1.0
|
|
CHA
|
A:BCL405
|
3.5
|
17.2
|
1.0
|
|
CHD
|
A:BCL405
|
3.5
|
17.3
|
1.0
|
|
C12
|
A:BCL406
|
4.0
|
37.0
|
1.0
|
|
CA
|
A:LEU242
|
4.0
|
15.7
|
1.0
|
|
CB
|
A:LEU242
|
4.1
|
15.6
|
1.0
|
|
C3D
|
A:BCL405
|
4.2
|
13.9
|
1.0
|
|
C2B
|
A:BCL405
|
4.3
|
13.6
|
1.0
|
|
C3B
|
A:BCL405
|
4.3
|
15.7
|
1.0
|
|
C2D
|
A:BCL405
|
4.3
|
15.2
|
1.0
|
|
CD1
|
A:LEU242
|
4.3
|
14.0
|
1.0
|
|
N
|
A:PHE243
|
4.4
|
16.2
|
1.0
|
|
C3A
|
A:BCL405
|
4.4
|
15.7
|
1.0
|
|
C2C
|
A:BCL405
|
4.4
|
15.0
|
1.0
|
|
C3C
|
A:BCL405
|
4.5
|
16.1
|
1.0
|
|
C2A
|
A:BCL405
|
4.5
|
13.7
|
1.0
|
|
C15
|
A:BCL406
|
4.6
|
38.3
|
1.0
|
|
CA
|
A:PHE243
|
4.7
|
18.1
|
1.0
|
|
CG
|
A:LEU242
|
4.8
|
14.8
|
1.0
|
|
C11
|
A:BCL406
|
4.9
|
33.7
|
1.0
|
|
CD
|
A:PRO244
|
4.9
|
18.9
|
1.0
|
|
C13
|
A:BCL406
|
4.9
|
28.3
|
1.0
|
|
CBD
|
A:BCL405
|
4.9
|
13.6
|
1.0
|
|
C16
|
A:BCL406
|
5.0
|
28.7
|
1.0
|
|
Magnesium binding site 6 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 6 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:13.4
occ:1.00
|
MG
|
A:BCL406
|
0.0
|
13.4
|
1.0
|
|
ND
|
A:BCL406
|
2.0
|
13.8
|
1.0
|
|
NB
|
A:BCL406
|
2.1
|
12.2
|
1.0
|
|
NC
|
A:BCL406
|
2.1
|
11.4
|
1.0
|
|
NA
|
A:BCL406
|
2.2
|
13.6
|
1.0
|
|
NE2
|
A:HIS145
|
2.3
|
14.6
|
1.0
|
|
C4D
|
A:BCL406
|
3.0
|
11.8
|
0.5
|
|
C4D
|
A:BCL406
|
3.0
|
11.8
|
0.5
|
|
C1B
|
A:BCL406
|
3.1
|
12.8
|
1.0
|
|
C4B
|
A:BCL406
|
3.1
|
12.6
|
1.0
|
|
C1C
|
A:BCL406
|
3.1
|
12.0
|
1.0
|
|
C1D
|
A:BCL406
|
3.1
|
11.9
|
1.0
|
|
C4A
|
A:BCL406
|
3.2
|
16.2
|
1.0
|
|
C4C
|
A:BCL406
|
3.2
|
11.7
|
1.0
|
|
CD2
|
A:HIS145
|
3.2
|
12.0
|
1.0
|
|
C1A
|
A:BCL406
|
3.2
|
14.0
|
1.0
|
|
CE1
|
A:HIS145
|
3.4
|
15.9
|
1.0
|
|
CHC
|
A:BCL406
|
3.4
|
12.0
|
1.0
|
|
CHB
|
A:BCL406
|
3.4
|
13.7
|
1.0
|
|
CHA
|
A:BCL406
|
3.5
|
12.7
|
0.5
|
|
CHA
|
A:BCL406
|
3.5
|
12.7
|
0.5
|
|
CHD
|
A:BCL406
|
3.5
|
12.0
|
1.0
|
|
C20
|
A:BCL403
|
3.9
|
26.4
|
0.5
|
|
C19
|
A:BCL403
|
4.0
|
28.8
|
0.5
|
|
C3D
|
A:BCL406
|
4.2
|
12.1
|
0.5
|
|
C3D
|
A:BCL406
|
4.2
|
12.0
|
0.5
|
|
C2B
|
A:BCL406
|
4.3
|
13.9
|
1.0
|
|
C18
|
A:BCL403
|
4.3
|
27.7
|
0.5
|
|
C2D
|
A:BCL406
|
4.3
|
17.4
|
1.0
|
|
C3B
|
A:BCL406
|
4.3
|
15.3
|
1.0
|
|
CG
|
A:HIS145
|
4.4
|
11.8
|
1.0
|
|
C2C
|
A:BCL406
|
4.4
|
14.2
|
1.0
|
|
ND1
|
A:HIS145
|
4.4
|
15.3
|
1.0
|
|
C3C
|
A:BCL406
|
4.5
|
14.8
|
1.0
|
|
C3A
|
A:BCL406
|
4.5
|
14.9
|
1.0
|
|
C2A
|
A:BCL406
|
4.5
|
13.7
|
1.0
|
|
C17
|
A:BCL403
|
4.8
|
29.8
|
0.5
|
|
C19
|
A:BCL403
|
4.8
|
27.9
|
0.5
|
|
CG2
|
A:VAL118
|
4.9
|
17.4
|
1.0
|
|
C18
|
A:BCL403
|
4.9
|
29.7
|
0.5
|
|
CBD
|
A:BCL406
|
4.9
|
14.8
|
0.5
|
|
CBD
|
A:BCL406
|
5.0
|
11.4
|
0.5
|
|
CZ
|
A:PHE225
|
5.0
|
17.4
|
1.0
|
|
Magnesium binding site 7 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 7 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg407
b:11.2
occ:1.00
|
MG
|
A:BCL407
|
0.0
|
11.2
|
1.0
|
|
ND
|
A:BCL407
|
2.0
|
12.0
|
1.0
|
|
NB
|
A:BCL407
|
2.1
|
10.1
|
1.0
|
|
NC
|
A:BCL407
|
2.1
|
12.1
|
1.0
|
|
NA
|
A:BCL407
|
2.2
|
11.8
|
1.0
|
|
ND1
|
A:HIS297
|
2.3
|
12.2
|
1.0
|
|
C4D
|
A:BCL407
|
3.0
|
14.9
|
1.0
|
|
C4B
|
A:BCL407
|
3.0
|
11.5
|
1.0
|
|
C1B
|
A:BCL407
|
3.1
|
10.6
|
1.0
|
|
C1C
|
A:BCL407
|
3.1
|
12.8
|
1.0
|
|
C4A
|
A:BCL407
|
3.2
|
13.2
|
1.0
|
|
C1D
|
A:BCL407
|
3.2
|
14.6
|
1.0
|
|
C4C
|
A:BCL407
|
3.2
|
12.8
|
1.0
|
|
CE1
|
A:HIS297
|
3.2
|
12.3
|
1.0
|
|
C1A
|
A:BCL407
|
3.2
|
13.2
|
1.0
|
|
CG
|
A:HIS297
|
3.3
|
11.9
|
1.0
|
|
CHC
|
A:BCL407
|
3.4
|
13.8
|
1.0
|
|
CHB
|
A:BCL407
|
3.4
|
12.8
|
1.0
|
|
CHA
|
A:BCL407
|
3.5
|
14.9
|
1.0
|
|
CHD
|
A:BCL407
|
3.5
|
13.2
|
1.0
|
|
C4
|
A:BCL403
|
3.6
|
22.4
|
1.0
|
|
CB
|
A:HIS297
|
3.7
|
11.6
|
1.0
|
|
C2B
|
A:BCL407
|
4.2
|
11.2
|
1.0
|
|
C3D
|
A:BCL407
|
4.2
|
13.1
|
1.0
|
|
C3B
|
A:BCL407
|
4.3
|
11.2
|
0.5
|
|
C3B
|
A:BCL407
|
4.3
|
11.1
|
0.5
|
|
C2D
|
A:BCL407
|
4.3
|
13.4
|
1.0
|
|
NE2
|
A:HIS297
|
4.4
|
12.2
|
1.0
|
|
CD2
|
A:HIS297
|
4.4
|
12.2
|
1.0
|
|
C3
|
A:BCL403
|
4.4
|
20.1
|
1.0
|
|
C2C
|
A:BCL407
|
4.4
|
18.3
|
1.0
|
|
C3A
|
A:BCL407
|
4.5
|
12.6
|
1.0
|
|
C3C
|
A:BCL407
|
4.5
|
12.6
|
1.0
|
|
C2A
|
A:BCL407
|
4.5
|
10.9
|
1.0
|
|
CG2
|
A:ILE293
|
4.6
|
13.4
|
1.0
|
|
CBD
|
A:BCL407
|
5.0
|
11.3
|
1.0
|
|
Magnesium binding site 8 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 8 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:14.0
occ:1.00
|
MG
|
B:BCL401
|
0.0
|
14.0
|
1.0
|
|
ND
|
B:BCL401
|
2.0
|
12.7
|
1.0
|
|
NB
|
B:BCL401
|
2.1
|
13.7
|
1.0
|
|
NC
|
B:BCL401
|
2.1
|
13.1
|
1.0
|
|
NA
|
B:BCL401
|
2.2
|
12.0
|
1.0
|
|
NE2
|
B:HIS110
|
2.4
|
15.9
|
1.0
|
|
C4D
|
B:BCL401
|
3.0
|
13.2
|
1.0
|
|
C4B
|
B:BCL401
|
3.1
|
13.2
|
1.0
|
|
C1B
|
B:BCL401
|
3.1
|
12.9
|
1.0
|
|
C1C
|
B:BCL401
|
3.1
|
11.7
|
1.0
|
|
C1D
|
B:BCL401
|
3.1
|
16.0
|
1.0
|
|
C4A
|
B:BCL401
|
3.2
|
11.4
|
1.0
|
|
C4C
|
B:BCL401
|
3.2
|
17.3
|
1.0
|
|
C1A
|
B:BCL401
|
3.2
|
12.4
|
1.0
|
|
CE1
|
B:HIS110
|
3.3
|
20.3
|
1.0
|
|
CD2
|
B:HIS110
|
3.4
|
14.2
|
1.0
|
|
CHC
|
B:BCL401
|
3.4
|
13.7
|
1.0
|
|
CHB
|
B:BCL401
|
3.4
|
13.2
|
1.0
|
|
CHA
|
B:BCL401
|
3.5
|
15.2
|
1.0
|
|
CHD
|
B:BCL401
|
3.5
|
13.8
|
1.0
|
|
C3
|
B:BCL401
|
3.9
|
17.9
|
1.0
|
|
C2
|
B:BCL401
|
4.0
|
16.2
|
1.0
|
|
C3D
|
B:BCL401
|
4.2
|
11.3
|
1.0
|
|
C4
|
B:BCL401
|
4.3
|
17.7
|
1.0
|
|
C2B
|
B:BCL401
|
4.3
|
14.1
|
1.0
|
|
C2D
|
B:BCL401
|
4.3
|
14.9
|
1.0
|
|
C3B
|
B:BCL401
|
4.3
|
13.2
|
1.0
|
|
C5
|
B:BCL401
|
4.3
|
18.6
|
1.0
|
|
ND1
|
B:HIS110
|
4.4
|
16.5
|
1.0
|
|
C1
|
B:BCL401
|
4.4
|
16.9
|
1.0
|
|
C2C
|
B:BCL401
|
4.4
|
13.3
|
1.0
|
|
CG
|
B:HIS110
|
4.5
|
13.1
|
1.0
|
|
C3C
|
B:BCL401
|
4.5
|
13.1
|
1.0
|
|
C3A
|
B:BCL401
|
4.5
|
13.4
|
1.0
|
|
C2A
|
B:BCL401
|
4.5
|
13.6
|
1.0
|
|
O2A
|
B:BCL401
|
4.6
|
17.4
|
1.0
|
|
CD2
|
B:LEU103
|
4.7
|
35.9
|
1.0
|
|
C6
|
B:BCL401
|
4.9
|
20.1
|
1.0
|
|
CBD
|
B:BCL401
|
4.9
|
12.6
|
1.0
|
|
Magnesium binding site 9 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 9 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:12.5
occ:1.00
|
MG
|
B:BCL402
|
0.0
|
12.5
|
1.0
|
|
ND
|
B:BCL402
|
2.0
|
8.6
|
1.0
|
|
NB
|
B:BCL402
|
2.1
|
11.9
|
1.0
|
|
NC
|
B:BCL402
|
2.1
|
12.6
|
1.0
|
|
O
|
B:HOH701
|
2.2
|
14.1
|
1.0
|
|
NA
|
B:BCL402
|
2.2
|
9.2
|
1.0
|
|
C4D
|
B:BCL402
|
3.0
|
8.4
|
1.0
|
|
C1B
|
B:BCL402
|
3.1
|
10.9
|
1.0
|
|
C4B
|
B:BCL402
|
3.1
|
12.0
|
1.0
|
|
C1C
|
B:BCL402
|
3.1
|
11.1
|
1.0
|
|
C1D
|
B:BCL402
|
3.1
|
11.2
|
1.0
|
|
C4A
|
B:BCL402
|
3.2
|
11.8
|
1.0
|
|
C4C
|
B:BCL402
|
3.2
|
12.5
|
1.0
|
|
C1A
|
B:BCL402
|
3.3
|
11.7
|
1.0
|
|
CHB
|
B:BCL402
|
3.4
|
12.1
|
1.0
|
|
CHC
|
B:BCL402
|
3.4
|
11.0
|
1.0
|
|
CHA
|
B:BCL402
|
3.5
|
10.6
|
1.0
|
|
CHD
|
B:BCL402
|
3.5
|
10.2
|
1.0
|
|
C12
|
B:BCL407
|
3.9
|
16.5
|
1.0
|
|
O
|
B:HOH716
|
4.1
|
18.2
|
1.0
|
|
C3D
|
B:BCL402
|
4.2
|
9.2
|
1.0
|
|
C2D
|
B:BCL402
|
4.3
|
11.6
|
1.0
|
|
C2B
|
B:BCL402
|
4.3
|
10.9
|
1.0
|
|
O
|
B:HOH537
|
4.3
|
24.0
|
1.0
|
|
C3B
|
B:BCL402
|
4.3
|
11.1
|
1.0
|
|
C2C
|
B:BCL402
|
4.5
|
8.7
|
1.0
|
|
C3C
|
B:BCL402
|
4.5
|
11.6
|
1.0
|
|
C3A
|
B:BCL402
|
4.5
|
9.5
|
1.0
|
|
CG2
|
B:VAL74
|
4.5
|
13.3
|
1.0
|
|
C2A
|
B:BCL402
|
4.5
|
12.2
|
1.0
|
|
C10
|
B:BCL407
|
4.6
|
12.7
|
1.0
|
|
C15
|
B:BCL407
|
4.7
|
25.2
|
0.7
|
|
OD1
|
B:ASN79
|
4.7
|
22.9
|
1.0
|
|
C11
|
B:BCL407
|
4.7
|
14.9
|
1.0
|
|
C13
|
B:BCL407
|
4.8
|
18.7
|
1.0
|
|
C15
|
B:BCL407
|
4.9
|
26.1
|
0.3
|
|
CBD
|
B:BCL402
|
5.0
|
9.4
|
1.0
|
|
C14
|
B:BCL407
|
5.0
|
19.8
|
1.0
|
|
Magnesium binding site 10 out
of 14 in 6mez
Go back to
Magnesium Binding Sites List in 6mez
Magnesium binding site 10 out
of 14 in the X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of X-Ray Structure of the Fenna-Matthews-Olsen Antenna Complex From Prosthecochloris Aestuarii within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg403
b:11.2
occ:1.00
|
MG
|
B:BCL403
|
0.0
|
11.2
|
1.0
|
|
ND
|
B:BCL403
|
2.0
|
9.8
|
1.0
|
|
NB
|
B:BCL403
|
2.1
|
12.2
|
1.0
|
|
NC
|
B:BCL403
|
2.1
|
10.7
|
1.0
|
|
NA
|
B:BCL403
|
2.2
|
11.8
|
1.0
|
|
NE2
|
B:HIS298
|
2.3
|
11.2
|
1.0
|
|
C4D
|
B:BCL403
|
3.0
|
9.2
|
1.0
|
|
C4B
|
B:BCL403
|
3.1
|
14.2
|
1.0
|
|
C1B
|
B:BCL403
|
3.1
|
12.7
|
1.0
|
|
C1C
|
B:BCL403
|
3.1
|
10.2
|
1.0
|
|
C1D
|
B:BCL403
|
3.1
|
11.0
|
1.0
|
|
C4A
|
B:BCL403
|
3.2
|
11.0
|
1.0
|
|
CE1
|
B:HIS298
|
3.2
|
12.2
|
1.0
|
|
C4C
|
B:BCL403
|
3.2
|
10.9
|
1.0
|
|
C1A
|
B:BCL403
|
3.2
|
9.2
|
1.0
|
|
CD2
|
B:HIS298
|
3.3
|
9.4
|
1.0
|
|
CHC
|
B:BCL403
|
3.4
|
13.8
|
1.0
|
|
CHB
|
B:BCL403
|
3.4
|
11.6
|
1.0
|
|
CHA
|
B:BCL403
|
3.5
|
9.5
|
1.0
|
|
CHD
|
B:BCL403
|
3.5
|
11.9
|
1.0
|
|
C3D
|
B:BCL403
|
4.2
|
12.2
|
1.0
|
|
C2B
|
B:BCL403
|
4.3
|
9.3
|
1.0
|
|
ND1
|
B:HIS298
|
4.3
|
11.5
|
1.0
|
|
C2D
|
B:BCL403
|
4.3
|
10.1
|
1.0
|
|
C3B
|
B:BCL403
|
4.3
|
12.4
|
1.0
|
|
CG
|
B:HIS298
|
4.4
|
12.4
|
1.0
|
|
C2C
|
B:BCL403
|
4.4
|
14.1
|
1.0
|
|
C3C
|
B:BCL403
|
4.5
|
12.3
|
1.0
|
|
C3A
|
B:BCL403
|
4.5
|
13.1
|
1.0
|
|
C2A
|
B:BCL403
|
4.5
|
10.6
|
1.0
|
|
CBC
|
B:BCL404
|
4.6
|
13.6
|
1.0
|
|
CD1
|
B:ILE265
|
4.9
|
24.2
|
1.0
|
|
CBD
|
B:BCL403
|
4.9
|
9.9
|
1.0
|
|
Reference:
X.Lu,
B.Selvaraj,
S.Ghimire-Rijal,
G.S.Orf,
F.Meilleur,
R.E.Blankenship,
M.J.Cuneo,
D.A.A.Myles.
Neutron and X-Ray Analysis of the Fenna-Matthews-Olson Photosynthetic Antenna Complex From Prosthecochloris Aestuarii. Acta Crystallogr F Struct V. 75 171 2019BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 30839291
DOI: 10.1107/S2053230X19000724
Page generated: Tue Oct 1 11:36:37 2024
|
