Magnesium in PDB 6mm5: Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810)

Enzymatic activity of Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810)

All present enzymatic activity of Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810):
2.7.11.11;

Protein crystallography data

The structure of Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810), PDB code: 6mm5 was solved by F.Van Petegem, O.Haji-Ghassemi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.95 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.861, 74.881, 98.561, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810) (pdb code 6mm5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810), PDB code: 6mm5:

Magnesium binding site 1 out of 1 in 6mm5

Go back to Magnesium Binding Sites List in 6mm5
Magnesium binding site 1 out of 1 in the Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Catalytic Subunit of Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:32.4
occ:1.00
 O2G E:ANP402 2.0 34.4 1.0
O2B E:ANP402 2.1 33.9 1.0
O2A E:ANP402 2.1 33.4 1.0
OD2 E:ASP184 2.1 34.6 1.0
OD1 E:ASN171 2.2 36.5 1.0
O E:HOH519 2.2 27.2 1.0
CG E:ASN171 3.1 34.5 1.0
PB E:ANP402 3.1 37.1 1.0
CG E:ASP184 3.1 30.2 1.0
PG E:ANP402 3.2 36.6 1.0
PA E:ANP402 3.3 36.6 1.0
ND2 E:ASN171 3.3 35.5 1.0
N3B E:ANP402 3.4 36.0 1.0
O3A E:ANP402 3.5 37.3 1.0
CB E:ASP184 3.7 33.5 1.0
O E:HOH626 3.9 43.9 1.0
O E:HOH583 4.0 42.7 1.0
NZ E:LYS168 4.1 34.6 1.0
O1G E:ANP402 4.1 38.1 1.0
CE E:LYS168 4.1 34.2 1.0
O1A E:ANP402 4.1 34.6 1.0
O E:HOH604 4.2 40.5 1.0
OD1 E:ASP184 4.2 34.7 1.0
OD2 E:ASP166 4.2 33.6 1.0
O3G E:ANP402 4.3 40.1 1.0
O5' E:ANP402 4.4 37.9 1.0
CB E:ASN171 4.5 32.2 1.0
O1B E:ANP402 4.5 35.1 1.0
O E:HOH522 4.5 41.2 1.0
C5' E:ANP402 4.7 37.3 1.0

Reference:

O.Haji-Ghassemi, Z.Yuchi, F.Van Petegem. Camp-Dependent Protein Kinase A in Complex with RYR2 Peptide (2799-2810) Mol.Cell 2019.
ISSN: ISSN 1097-2765
Page generated: Mon Dec 14 23:37:24 2020

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