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Magnesium in PDB 6mrc: Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex

Enzymatic activity of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex

All present enzymatic activity of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex:
3.6.4.9;

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex (pdb code 6mrc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex, PDB code: 6mrc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in 6mrc

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Magnesium binding site 1 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg602

b:56.5
occ:1.00
OD2 H:ASP87 2.0 56.6 1.0
O1B H:ADP601 2.1 57.6 1.0
O H:HOH703 2.2 57.1 1.0
OD1 H:ASP87 2.6 56.6 1.0
CG H:ASP87 2.6 56.6 1.0
O H:HOH701 3.1 54.7 1.0
PB H:ADP601 3.3 57.6 1.0
O2B H:ADP601 3.6 57.6 1.0
HB3 H:SER151 3.9 58.3 1.0
HA H:SER151 3.9 58.3 1.0
O3A H:ADP601 3.9 57.6 1.0
O5' H:ADP601 4.1 57.6 1.0
HB3 H:ASP399 4.1 59.1 1.0
CB H:ASP87 4.1 56.6 1.0
C5' H:ADP601 4.1 57.6 1.0
H H:GLY88 4.2 55.3 1.0
O H:SER151 4.3 58.3 1.0
PA H:ADP601 4.4 57.6 1.0
O1A H:ADP601 4.4 57.6 1.0
HB2 H:ASP87 4.4 56.6 1.0
O H:HOH706 4.4 56.9 1.0
CB H:SER151 4.5 58.3 1.0
O3B H:ADP601 4.5 57.6 1.0
HB3 H:ASP87 4.5 56.6 1.0
HG H:SER151 4.5 58.3 1.0
OG H:SER151 4.5 58.3 1.0
CA H:SER151 4.6 58.3 1.0
HA H:ASP87 4.9 56.6 1.0
N H:GLY88 4.9 55.3 1.0
C H:SER151 5.0 58.3 1.0

Magnesium binding site 2 out of 14 in 6mrc

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Magnesium binding site 2 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Mg602

b:57.1
occ:1.00
O1B N:ADP601 2.0 57.6 1.0
OD2 N:ASP87 2.0 56.2 1.0
O N:HOH703 2.2 56.8 1.0
OD1 N:ASP87 2.5 56.2 1.0
CG N:ASP87 2.6 56.2 1.0
O N:HOH701 3.1 54.9 1.0
PB N:ADP601 3.3 57.6 1.0
O2B N:ADP601 3.6 57.6 1.0
HB3 N:SER151 3.8 57.6 1.0
HA N:SER151 3.9 57.6 1.0
O3A N:ADP601 4.0 57.6 1.0
CB N:ASP87 4.0 56.2 1.0
H N:GLY88 4.1 55.2 1.0
O5' N:ADP601 4.1 57.6 1.0
HB3 N:ASP399 4.1 58.4 1.0
C5' N:ADP601 4.2 57.6 1.0
HB2 N:ASP87 4.3 56.2 1.0
O N:SER151 4.4 57.6 1.0
PA N:ADP601 4.4 57.6 1.0
CB N:SER151 4.4 57.6 1.0
HB3 N:ASP87 4.5 56.2 1.0
O3B N:ADP601 4.5 57.6 1.0
HG N:SER151 4.5 57.6 1.0
OG N:SER151 4.5 57.6 1.0
O1A N:ADP601 4.5 57.6 1.0
CA N:SER151 4.6 57.6 1.0
O N:HOH706 4.6 55.6 1.0
HA N:ASP87 4.8 56.2 1.0
N N:GLY88 4.8 55.2 1.0
CA N:ASP87 5.0 56.2 1.0

Magnesium binding site 3 out of 14 in 6mrc

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Magnesium binding site 3 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg602

b:56.5
occ:1.00
OD2 M:ASP87 2.1 55.9 1.0
O M:HOH703 2.1 57.2 1.0
O1B M:ADP601 2.1 56.7 1.0
OD1 M:ASP87 2.6 55.9 1.0
CG M:ASP87 2.6 55.9 1.0
O M:HOH701 3.1 54.4 1.0
PB M:ADP601 3.3 56.7 1.0
O2B M:ADP601 3.5 56.7 1.0
HB3 M:SER151 3.7 57.5 1.0
HA M:SER151 3.8 57.5 1.0
O3A M:ADP601 4.0 56.7 1.0
HB3 M:ASP399 4.1 58.9 1.0
O5' M:ADP601 4.1 56.7 1.0
CB M:ASP87 4.1 55.9 1.0
C5' M:ADP601 4.2 56.7 1.0
H M:GLY88 4.2 54.8 1.0
O M:SER151 4.2 57.5 1.0
O M:HOH706 4.3 56.8 1.0
HB2 M:ASP87 4.4 55.9 1.0
O1A M:ADP601 4.4 56.7 1.0
PA M:ADP601 4.4 56.7 1.0
CB M:SER151 4.4 57.5 1.0
CA M:SER151 4.5 57.5 1.0
HB3 M:ASP87 4.5 55.9 1.0
O3B M:ADP601 4.5 56.7 1.0
HG M:SER151 4.5 57.5 1.0
OG M:SER151 4.6 57.5 1.0
C M:SER151 4.9 57.5 1.0
HA M:ASP87 4.9 55.9 1.0
N M:GLY88 4.9 54.8 1.0
CB M:ASP399 5.0 58.9 1.0

Magnesium binding site 4 out of 14 in 6mrc

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Magnesium binding site 4 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg602

b:56.3
occ:1.00
O L:HOH703 2.0 54.8 1.0
OD2 L:ASP87 2.1 55.7 1.0
O1B L:ADP601 2.1 56.1 1.0
OD1 L:ASP87 2.6 55.7 1.0
CG L:ASP87 2.7 55.7 1.0
O L:HOH701 3.2 53.4 1.0
PB L:ADP601 3.3 56.1 1.0
O2B L:ADP601 3.7 56.1 1.0
HB3 L:SER151 3.7 56.7 1.0
HA L:SER151 3.8 56.7 1.0
O3A L:ADP601 3.9 56.1 1.0
O5' L:ADP601 4.1 56.1 1.0
CB L:ASP87 4.1 55.7 1.0
C5' L:ADP601 4.1 56.1 1.0
H L:GLY88 4.2 54.8 1.0
HB3 L:ASP399 4.2 57.0 1.0
O L:SER151 4.3 56.7 1.0
CB L:SER151 4.3 56.7 1.0
O L:HOH706 4.3 54.3 1.0
OG L:SER151 4.3 56.7 1.0
HB2 L:ASP87 4.4 55.7 1.0
HG L:SER151 4.4 56.7 1.0
CA L:SER151 4.4 56.7 1.0
PA L:ADP601 4.5 56.1 1.0
HB3 L:ASP87 4.5 55.7 1.0
O3B L:ADP601 4.5 56.1 1.0
O1A L:ADP601 4.6 56.1 1.0
C L:SER151 4.9 56.7 1.0
N L:GLY88 4.9 54.8 1.0
HA L:ASP87 4.9 55.7 1.0

Magnesium binding site 5 out of 14 in 6mrc

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Magnesium binding site 5 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg602

b:54.7
occ:1.00
O1B K:ADP601 2.1 56.4 1.0
OD2 K:ASP87 2.1 54.7 1.0
O K:HOH703 2.3 55.6 1.0
OD1 K:ASP87 2.7 54.7 1.0
CG K:ASP87 2.7 54.7 1.0
O K:HOH701 3.2 54.1 1.0
PB K:ADP601 3.4 56.4 1.0
O2B K:ADP601 3.7 56.4 1.0
HB3 K:SER151 3.7 57.0 1.0
HA K:SER151 3.8 57.0 1.0
O5' K:ADP601 4.0 56.4 1.0
O3A K:ADP601 4.0 56.4 1.0
HB3 K:ASP399 4.0 57.8 1.0
O K:SER151 4.1 57.0 1.0
CB K:ASP87 4.2 54.7 1.0
C5' K:ADP601 4.2 56.4 1.0
H K:GLY88 4.2 53.6 1.0
HG K:SER151 4.3 57.0 1.0
O K:HOH706 4.3 56.6 1.0
CB K:SER151 4.4 57.0 1.0
PA K:ADP601 4.4 56.4 1.0
HB2 K:ASP87 4.4 54.7 1.0
CA K:SER151 4.4 57.0 1.0
O1A K:ADP601 4.4 56.4 1.0
O3B K:ADP601 4.5 56.4 1.0
OG K:SER151 4.6 57.0 1.0
HB3 K:ASP87 4.6 54.7 1.0
C K:SER151 4.7 57.0 1.0
O K:HOH704 4.9 56.2 1.0
HA K:ASP87 4.9 54.7 1.0
CB K:ASP399 5.0 57.8 1.0
N K:GLY88 5.0 53.6 1.0

Magnesium binding site 6 out of 14 in 6mrc

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Magnesium binding site 6 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg602

b:55.8
occ:1.00
O1B J:ADP601 2.0 56.5 1.0
OD2 J:ASP87 2.0 56.1 1.0
O J:HOH703 2.4 57.8 1.0
OD1 J:ASP87 2.6 56.1 1.0
CG J:ASP87 2.6 56.1 1.0
O J:HOH701 3.0 52.5 1.0
PB J:ADP601 3.3 56.5 1.0
O2B J:ADP601 3.7 56.5 1.0
HB3 J:SER151 3.9 57.3 1.0
HA J:SER151 3.9 57.3 1.0
O3A J:ADP601 4.0 56.5 1.0
HB3 J:ASP399 4.0 57.9 1.0
CB J:ASP87 4.1 56.1 1.0
O5' J:ADP601 4.1 56.5 1.0
H J:GLY88 4.2 55.0 1.0
C5' J:ADP601 4.2 56.5 1.0
O J:SER151 4.2 57.3 1.0
HB2 J:ASP87 4.4 56.1 1.0
O1A J:ADP601 4.4 56.5 1.0
O J:HOH706 4.4 57.0 1.0
PA J:ADP601 4.4 56.5 1.0
O3B J:ADP601 4.5 56.5 1.0
HG J:SER151 4.5 57.3 1.0
HB3 J:ASP87 4.5 56.1 1.0
CB J:SER151 4.5 57.3 1.0
CA J:SER151 4.6 57.3 1.0
OG J:SER151 4.7 57.3 1.0
HA J:ASP87 4.9 56.1 1.0
C J:SER151 4.9 57.3 1.0
N J:GLY88 4.9 55.0 1.0
CB J:ASP399 4.9 57.9 1.0

Magnesium binding site 7 out of 14 in 6mrc

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Magnesium binding site 7 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg602

b:56.3
occ:1.00
OD2 I:ASP87 2.0 55.7 1.0
O1B I:ADP601 2.0 57.1 1.0
O I:HOH703 2.2 56.2 1.0
OD1 I:ASP87 2.5 55.7 1.0
CG I:ASP87 2.6 55.7 1.0
O I:HOH701 3.1 53.4 1.0
PB I:ADP601 3.3 57.1 1.0
O2B I:ADP601 3.7 57.1 1.0
HB3 I:SER151 3.9 57.9 1.0
HA I:SER151 3.9 57.9 1.0
O3A I:ADP601 3.9 57.1 1.0
O5' I:ADP601 4.0 57.1 1.0
H I:GLY88 4.1 54.3 1.0
C5' I:ADP601 4.1 57.1 1.0
CB I:ASP87 4.1 55.7 1.0
HB3 I:ASP399 4.2 57.9 1.0
O I:SER151 4.3 57.9 1.0
HG I:SER151 4.3 57.9 1.0
HB2 I:ASP87 4.4 55.7 1.0
PA I:ADP601 4.4 57.1 1.0
HB3 I:ASP87 4.4 55.7 1.0
O1A I:ADP601 4.5 57.1 1.0
O I:HOH706 4.5 55.9 1.0
O3B I:ADP601 4.5 57.1 1.0
CB I:SER151 4.5 57.9 1.0
CA I:SER151 4.6 57.9 1.0
OG I:SER151 4.6 57.9 1.0
N I:GLY88 4.8 54.3 1.0
HA I:ASP87 4.9 55.7 1.0
C I:SER151 4.9 57.9 1.0

Magnesium binding site 8 out of 14 in 6mrc

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Magnesium binding site 8 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:56.6
occ:1.00
OD2 D:ASP87 2.0 55.9 1.0
O3B D:ADP601 2.0 57.0 1.0
O D:HOH703 2.2 56.1 1.0
OD1 D:ASP87 2.5 55.9 1.0
CG D:ASP87 2.5 55.9 1.0
O D:HOH701 3.2 54.5 1.0
PB D:ADP601 3.3 57.0 1.0
O2B D:ADP601 3.5 57.0 1.0
HB3 D:SER151 3.8 57.5 1.0
O3A D:ADP601 3.9 57.0 1.0
HA D:SER151 3.9 57.5 1.0
CB D:ASP87 4.0 55.9 1.0
O5' D:ADP601 4.1 57.0 1.0
H D:GLY88 4.1 54.9 1.0
HB3 D:ASP399 4.1 57.7 1.0
C5' D:ADP601 4.1 57.0 1.0
HB2 D:ASP87 4.3 55.9 1.0
O D:SER151 4.4 57.5 1.0
PA D:ADP601 4.4 57.0 1.0
CB D:SER151 4.4 57.5 1.0
HG D:SER151 4.4 57.5 1.0
HB3 D:ASP87 4.4 55.9 1.0
O1B D:ADP601 4.5 57.0 1.0
O2A D:ADP601 4.5 57.0 1.0
OG D:SER151 4.5 57.5 1.0
CA D:SER151 4.6 57.5 1.0
O D:HOH706 4.6 56.6 1.0
HA D:ASP87 4.8 55.9 1.0
N D:GLY88 4.8 54.9 1.0
CA D:ASP87 5.0 55.9 1.0
C D:SER151 5.0 57.5 1.0

Magnesium binding site 9 out of 14 in 6mrc

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Magnesium binding site 9 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:57.3
occ:1.00
OD2 C:ASP87 2.1 55.9 1.0
O3B C:ADP601 2.1 56.7 1.0
O C:HOH703 2.1 57.2 1.0
OD1 C:ASP87 2.6 55.9 1.0
CG C:ASP87 2.6 55.9 1.0
O C:HOH701 3.2 53.8 1.0
PB C:ADP601 3.3 56.7 1.0
O2B C:ADP601 3.5 56.7 1.0
HB3 C:SER151 3.8 57.6 1.0
HA C:SER151 3.8 57.6 1.0
O3A C:ADP601 3.9 56.7 1.0
O5' C:ADP601 4.0 56.7 1.0
HB3 C:ASP399 4.1 58.8 1.0
CB C:ASP87 4.1 55.9 1.0
C5' C:ADP601 4.1 56.7 1.0
H C:GLY88 4.2 54.6 1.0
O C:SER151 4.2 57.6 1.0
O C:HOH706 4.3 57.7 1.0
PA C:ADP601 4.4 56.7 1.0
HB2 C:ASP87 4.4 55.9 1.0
CB C:SER151 4.4 57.6 1.0
O2A C:ADP601 4.4 56.7 1.0
CA C:SER151 4.5 57.6 1.0
O1B C:ADP601 4.5 56.7 1.0
HB3 C:ASP87 4.5 55.9 1.0
HG C:SER151 4.6 57.6 1.0
OG C:SER151 4.6 57.6 1.0
C C:SER151 4.9 57.6 1.0
HA C:ASP87 4.9 55.9 1.0
N C:GLY88 4.9 54.6 1.0

Magnesium binding site 10 out of 14 in 6mrc

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Magnesium binding site 10 out of 14 in the Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Adp-Bound Human Mitochondrial HSP60-HSP10 Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:57.1
occ:1.00
O B:HOH703 2.0 54.7 1.0
OD2 B:ASP87 2.0 56.5 1.0
O3B B:ADP601 2.1 56.7 1.0
OD1 B:ASP87 2.6 56.5 1.0
CG B:ASP87 2.6 56.5 1.0
O B:HOH701 3.2 53.8 1.0
PB B:ADP601 3.4 56.7 1.0
HB3 B:SER151 3.7 57.5 1.0
O2B B:ADP601 3.8 56.7 1.0
HA B:SER151 3.8 57.5 1.0
O3A B:ADP601 3.9 56.7 1.0
O5' B:ADP601 4.0 56.7 1.0
C5' B:ADP601 4.0 56.7 1.0
CB B:ASP87 4.1 56.5 1.0
H B:GLY88 4.2 55.2 1.0
HB3 B:ASP399 4.2 58.2 1.0
CB B:SER151 4.3 57.5 1.0
O B:SER151 4.3 57.5 1.0
OG B:SER151 4.3 57.5 1.0
O B:HOH706 4.4 55.2 1.0
HG B:SER151 4.4 57.5 1.0
HB2 B:ASP87 4.4 56.5 1.0
PA B:ADP601 4.4 56.7 1.0
CA B:SER151 4.5 57.5 1.0
HB3 B:ASP87 4.5 56.5 1.0
O1B B:ADP601 4.5 56.7 1.0
O2A B:ADP601 4.5 56.7 1.0
N B:GLY88 4.9 55.2 1.0
C B:SER151 4.9 57.5 1.0
HA B:ASP87 4.9 56.5 1.0

Reference:

Y.Gomez-Llorente, F.Jebara, R.Malik, S.Nissemblat, A.Azem, J.A.Hirsch, I.Ubarretxena-Belandia. Structural Bases For the Reaction Cycle of the Human Mitochondrial HSP60-HSP10 Chaperonin Complex To Be Published.
Page generated: Tue Oct 1 11:59:18 2024

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