Magnesium in PDB 6mv9: X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp

All present enzymatic activity of X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp:
1.17.4.1;

The structure of X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp, PDB code: 6mv9 was solved by W.C.Thomas, F.P.Brooks, J.P.Bacik, N.Ando, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.98 / 2.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	120.260, 126.400, 128.310, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 23.9

The binding sites of Magnesium atom in the X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp (pdb code 6mv9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp, PDB code: 6mv9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:32.5 occ:1.00 O1A A:TTP801 2.1 33.2 1.0 O3G A:TTP801 2.2 32.1 1.0 O1B A:TTP801 2.5 35.9 1.0 PA A:TTP801 3.5 29.3 1.0 PG A:TTP801 3.5 40.9 1.0 PB A:TTP801 3.5 32.5 1.0 O3A A:TTP801 3.8 32.6 1.0 O3B A:TTP801 3.9 36.7 1.0 O A:ASP177 4.0 26.8 1.0 CB A:SER178 4.1 24.3 1.0 O1G A:TTP801 4.2 47.6 1.0 NH2 A:ARG207 4.3 30.7 1.0 O2A A:TTP801 4.3 26.1 1.0 C5' A:TTP801 4.5 33.9 1.0 O5' A:TTP801 4.5 38.3 1.0 O2G A:TTP801 4.6 32.3 1.0 CA A:SER178 4.7 29.2 1.0 O2B A:TTP801 4.9 37.1 1.0

Magnesium binding site 2 out of 2 in the X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Crystal Structure of Bacillus Subtilis Ribonucleotide Reductase Nrde Alpha Subunit with Ttp and Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg803 b:24.6 occ:1.00 O1G B:TTP801 2.0 37.2 1.0 O2A B:TTP801 2.2 41.9 1.0 O2B B:TTP801 2.2 38.2 1.0 PG B:TTP801 3.3 45.2 1.0 PB B:TTP801 3.4 32.2 1.0 PA B:TTP801 3.5 31.0 1.0 O3B B:TTP801 3.7 32.3 1.0 O3A B:TTP801 3.8 33.6 1.0 O2G B:TTP801 3.8 39.9 1.0 O B:ASP177 4.1 27.8 1.0 CB B:SER178 4.3 24.6 1.0 O1A B:TTP801 4.3 29.6 1.0 NH2 B:ARG207 4.4 34.3 1.0 O3G B:TTP801 4.5 37.0 1.0 O5' B:TTP801 4.6 32.8 1.0 C5' B:TTP801 4.6 36.4 1.0 O1B B:TTP801 4.7 30.5 1.0 CA B:SER178 4.8 26.5 1.0

W.C.Thomas, F.P.Brooks 3Rd, A.A.Burnim, J.P.Bacik, J.Stubbe, J.T.Kaelber, J.Z.Chen, N.Ando. Convergent Allostery in Ribonucleotide Reductase. Nat Commun V. 10 2653 2019.
ISSN: ESSN 2041-1723
PubMed: 31201319
DOI: 10.1038/S41467-019-10568-4