Magnesium in PDB 6mwk: Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883

Enzymatic activity of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883

All present enzymatic activity of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883:
4.6.1.12;

Protein crystallography data

The structure of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883, PDB code: 6mwk was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	40.94 / 1.80
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	117.330, 68.040, 60.670, 90.00, 96.46, 90.00
*R / R_free (%)*	14.2 / 17.9

Other elements in 6mwk:

The structure of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883 also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883 (pdb code 6mwk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883, PDB code: 6mwk:

Magnesium binding site 1 out of 1 in 6mwk

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Magnesium Binding Sites List in 6mwk

Magnesium binding site 1 out of 1 in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn- 0883 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg205 b:32.7 occ:1.00	O	C:HOH369	2.1	36.5	1.0
	O	A:HOH340	2.1	31.7	1.0
	O	C:HOH376	2.1	30.0	1.0
	O	A:HOH349	2.2	29.8	1.0
	O	B:HOH381	2.3	39.0	1.0
	O	B:HOH410	2.8	38.1	1.0
	O	A:HOH403	2.9	30.0	1.0
	O	B:HOH407	3.3	29.9	1.0
	O	C:HOH318	3.7	36.0	1.0
	O	A:HOH422	4.1	26.0	1.0
	O	B:HOH336	4.1	38.9	1.0
	OE1	A:GLU149	4.2	11.6	1.0
	O	B:HOH411	4.2	18.0	1.0
	O	C:HOH396	4.2	14.9	1.0
	OE1	C:GLU149	4.2	13.4	1.0
	OE1	B:GLU149	4.3	11.9	1.0
	OE2	A:GLU149	4.4	11.0	1.0
	OE2	B:GLU149	4.6	12.3	1.0
	OE2	C:GLU149	4.6	13.8	1.0
	O	B:HOH398	4.6	19.3	1.0
	CD	A:GLU149	4.7	10.1	1.0
	CD	C:GLU149	4.9	11.0	1.0
	CD	B:GLU149	4.9	12.9	1.0

Reference:

J.Abendroth, D.M.Dranow, P.G.Pierce, J.R.Horn, T.J.Hagen, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase (Ispf) Burkholderia Pseudomallei in Complex with Ligand Hgn-0456. To Be Published.

Page generated: Tue Oct 1 12:04:16 2024

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