Atomistry » Magnesium » PDB 6mnv-6mxv » 6mxo
Atomistry »
  Magnesium »
    PDB 6mnv-6mxv »
      6mxo »

Magnesium in PDB 6mxo: Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg

Enzymatic activity of Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg

All present enzymatic activity of Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg:
2.7.7.7;

Protein crystallography data

The structure of Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg, PDB code: 6mxo was solved by H.Ouzon-Shubeita, S.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.86 / 2.04
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 98.560, 98.560, 81.713, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 23

Other elements in 6mxo:

The structure of Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg also contains other interesting chemical elements:

Platinum (Pt) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg (pdb code 6mxo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg, PDB code: 6mxo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6mxo

Go back to Magnesium Binding Sites List in 6mxo
Magnesium binding site 1 out of 2 in the Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:10.1
occ:1.00
OD1 A:ASP13 2.0 12.3 1.0
O1B A:0KX501 2.1 11.3 1.0
OD2 A:ASP115 2.1 11.0 1.0
O2A A:0KX501 2.1 14.3 1.0
O1G A:0KX501 2.1 10.9 1.0
O A:MET14 2.2 10.3 1.0
CG A:ASP13 3.0 13.3 1.0
PB A:0KX501 3.1 13.0 1.0
CG A:ASP115 3.2 13.2 1.0
PG A:0KX501 3.3 12.9 1.0
PA A:0KX501 3.3 13.6 1.0
C A:MET14 3.4 11.0 1.0
OD2 A:ASP13 3.4 17.5 1.0
N3A A:0KX501 3.5 12.2 1.0
O3B A:0KX501 3.5 11.2 1.0
MG A:MG503 3.5 12.4 1.0
O A:HOH620 3.7 15.2 1.0
OD1 A:ASP115 3.7 13.5 1.0
N A:MET14 3.9 10.8 1.0
NZ A:LYS231 3.9 19.2 1.0
O3G A:0KX501 4.0 12.3 1.0
C5' A:0KX501 4.0 12.5 1.0
O5' A:0KX501 4.2 12.7 1.0
CA A:MET14 4.2 11.1 1.0
C A:ASP13 4.2 11.4 1.0
CB A:ASP13 4.3 12.9 1.0
O A:HOH674 4.4 14.9 1.0
N A:ASP15 4.4 10.9 1.0
O2G A:0KX501 4.5 11.8 1.0
CB A:ASP115 4.5 12.7 1.0
O2B A:0KX501 4.5 12.7 1.0
N A:CYS16 4.5 10.2 1.0
O A:ASP13 4.5 10.6 1.0
CE A:LYS231 4.6 21.5 1.0
CA A:ASP15 4.6 11.0 1.0
O1A A:0KX501 4.6 11.9 1.0
CB A:MET14 4.6 12.4 1.0
N A:PHE17 4.7 11.6 1.0
C A:ASP15 4.7 11.6 1.0
CA A:ASP13 4.8 11.5 1.0
CB A:PHE17 4.8 10.8 1.0
O A:ASP115 4.9 14.6 1.0

Magnesium binding site 2 out of 2 in 6mxo

Go back to Magnesium Binding Sites List in 6mxo
Magnesium binding site 2 out of 2 in the Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Hpoleta Incorporating Dctp Opposite the 3-Prime Pt(Dach)- Gg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:12.4
occ:1.00
OD2 A:ASP13 2.1 17.5 1.0
OE2 A:GLU116 2.1 15.0 1.0
OD1 A:ASP115 2.2 13.5 1.0
O3' P:DG9 2.2 18.4 1.0
O A:HOH674 2.3 14.9 1.0
O2A A:0KX501 2.3 14.3 1.0
CG A:ASP115 3.1 13.2 1.0
CG A:ASP13 3.1 13.3 1.0
CD A:GLU116 3.1 16.6 1.0
PA A:0KX501 3.3 13.6 1.0
C3' P:DG9 3.3 18.9 1.0
OD2 A:ASP115 3.4 11.0 1.0
OD1 A:ASP13 3.5 12.3 1.0
MG A:MG502 3.5 10.1 1.0
O1A A:0KX501 3.7 11.9 1.0
O5' A:0KX501 3.7 12.7 1.0
OG A:SER113 3.7 16.4 1.0
OE1 A:GLU116 3.8 17.1 1.0
O A:HOH620 3.9 15.2 1.0
C5' A:0KX501 4.0 12.5 1.0
CG A:GLU116 4.1 14.6 1.0
NZ A:LYS224 4.2 20.7 1.0
C4' P:DG9 4.2 19.0 1.0
CB A:GLU116 4.2 14.4 1.0
CB A:ASP13 4.4 12.9 1.0
C2' P:DG9 4.5 18.6 1.0
CB A:ASP115 4.5 12.7 1.0
C A:ASP115 4.6 14.3 1.0
O A:ASP115 4.6 14.6 1.0
O1G A:0KX501 4.7 10.9 1.0
N3A A:0KX501 4.8 12.2 1.0
C5' P:DG9 4.8 19.9 1.0
N A:GLU116 4.8 12.8 1.0
CB A:SER113 4.8 17.7 1.0
O A:HOH612 4.9 25.0 1.0
O1B A:0KX501 4.9 11.3 1.0
CA A:ASP115 4.9 13.7 1.0

Reference:

H.Ouzon-Shubeita, M.Baker, M.C.Koag, S.Lee. Structural Basis For the Bypass of the Major Oxaliplatin-Dna Adducts By Human Dna Polymerase Eta. Biochem. J. V. 476 747 2019.
ISSN: ESSN 1470-8728
PubMed: 30709915
DOI: 10.1042/BCJ20180848
Page generated: Mon Dec 14 23:38:38 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy