Magnesium in PDB 6mxv: The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4

The structure of The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 6mxv was solved by K.Tan, T.Skarina, R.Di Leo, A.Savchenko, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.60 / 1.78
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.721, 111.108, 50.339, 90.00, 93.49, 90.00
R / Rfree (%)	15.8 / 18.8

The binding sites of Magnesium atom in the The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4 (pdb code 6mxv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 6mxv:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:27.6 occ:1.00 O A:HOH485 2.0 22.8 1.0 O B:HOH476 2.1 28.9 1.0 O A:HOH418 2.1 22.0 1.0 O A:HOH539 2.1 27.3 1.0 OE2 A:GLU222 2.2 25.4 1.0 CD A:GLU222 3.3 22.2 1.0 NE2 A:HIS226 3.8 28.3 1.0 OE1 A:GLU222 4.0 23.1 1.0 OD1 A:ASN141 4.1 18.1 0.6 O B:HOH556 4.1 33.0 1.0 OE2 B:GLU101 4.2 26.1 1.0 NE2 A:GLN145 4.2 21.7 1.0 O A:HOH416 4.2 30.3 1.0 NZ B:LYS98 4.2 23.6 1.0 O A:HOH424 4.4 17.5 1.0 CE1 A:HIS226 4.4 34.1 1.0 CG A:GLU222 4.5 20.1 1.0 OE1 B:GLU101 4.7 23.3 1.0 CG A:ASN141 4.8 15.2 0.6 ND2 A:ASN141 4.8 15.4 0.6 CD2 A:HIS226 4.9 27.1 1.0 CD B:GLU101 4.9 25.5 1.0

Magnesium binding site 2 out of 3 in the The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:17.3 occ:1.00 O B:HOH507 2.1 19.2 1.0 O B:ASN252 2.1 25.0 1.0 O B:HOH522 2.1 21.2 1.0 O B:HOH424 2.2 16.7 1.0 NE2 B:HIS180 2.3 17.9 1.0 C B:ASN252 3.2 42.1 1.0 CE1 B:HIS180 3.2 18.2 1.0 CD2 B:HIS180 3.3 18.1 1.0 OXT B:ASN252 3.6 41.3 1.0 OG B:SER250 4.2 50.1 1.0 O B:HOH567 4.3 43.1 1.0 ND1 B:HIS180 4.4 15.0 1.0 CG B:HIS180 4.4 17.9 1.0 CZ B:PHE176 4.4 15.9 1.0 CA B:ASN252 4.5 52.6 1.0 N B:GLY183 4.5 20.7 1.0 O B:ALA184 4.5 15.7 1.0 N B:ASN252 4.8 56.3 1.0 O B:GLN251 4.9 59.8 1.0 CE2 B:PHE176 4.9 15.0 1.0 CA B:GLY183 5.0 18.5 1.0

Magnesium binding site 3 out of 3 in the The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg303 b:34.5 occ:1.00 O A:HOH458 2.0 31.6 1.0 O B:HOH482 2.0 26.4 1.0 OE2 B:GLU222 2.2 29.8 1.0 O B:HOH402 2.2 24.6 1.0 CD B:GLU222 3.4 23.6 1.0 NE2 B:HIS226 3.9 23.6 1.0 OE1 B:GLU222 4.0 23.3 1.0 OD1 B:ASN141 4.0 20.8 0.5 O B:HOH557 4.1 27.8 1.0 OE2 A:GLU101 4.1 28.8 1.0 NZ A:LYS98 4.2 24.0 1.0 O B:HOH432 4.3 16.9 1.0 NE2 B:GLN145 4.3 22.6 1.0 O B:HOH436 4.5 32.4 1.0 CE1 B:HIS226 4.5 35.1 1.0 CG B:GLU222 4.5 18.1 1.0 CG B:ASN141 4.7 18.0 0.5 OE1 A:GLU101 4.7 25.6 1.0 ND2 B:ASN141 4.7 17.5 0.5 CD A:GLU101 4.8 28.9 1.0 CD2 B:HIS226 4.9 27.5 1.0 O A:HOH507 4.9 25.1 1.0

K.Tan, T.Skarina, R.Di Leo, A.Savchenko, A.Joachimiak. The Crystal Structure of A Rhodanese-Like Family Protein From Francisella Tularensis Subsp. Tularensis Schu S4 To Be Published.