Magnesium in PDB 6n6n: Ftsy-Ng High-Resolution

The structure of Ftsy-Ng High-Resolution, PDB code: 6n6n was solved by S.F.Ataide, C.Faoro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.17 / 1.88
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.420, 76.883, 106.935, 90.00, 92.54, 90.00
R / Rfree (%)	19.5 / 24.3

The binding sites of Magnesium atom in the Ftsy-Ng High-Resolution (pdb code 6n6n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Ftsy-Ng High-Resolution, PDB code: 6n6n:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Ftsy-Ng High-Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ftsy-Ng High-Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:55.4 occ:1.00 HG1 A:THR307 1.6 36.2 1.0 O1G A:GCP501 1.8 68.7 1.0 O A:HOH746 1.9 65.2 1.0 O A:HOH622 2.2 30.0 1.0 OG1 A:THR307 2.3 30.2 1.0 O A:HOH642 2.7 46.9 1.0 O1B A:GCP501 2.7 38.0 1.0 PG A:GCP501 3.2 84.2 1.0 HB A:THR307 3.3 42.7 1.0 CB A:THR307 3.3 35.6 1.0 HG21 A:THR307 3.4 40.4 1.0 HH21 A:ARG333 3.4 93.4 1.0 O A:HOH624 3.6 29.6 1.0 HH22 A:ARG333 3.7 93.4 1.0 O A:HOH638 3.8 28.5 1.0 CG2 A:THR307 3.9 33.7 1.0 PB A:GCP501 3.9 54.9 1.0 NH2 A:ARG333 3.9 77.8 1.0 C3B A:GCP501 3.9 65.8 1.0 H3B1 A:GCP501 4.0 79.0 1.0 O3G A:GCP501 4.0 91.7 1.0 HB3 A:ALA336 4.0 37.8 1.0 HB1 A:ALA336 4.2 37.8 1.0 HG23 A:THR307 4.2 40.4 1.0 O2G A:GCP501 4.3 56.8 1.0 HA A:ALA336 4.3 34.9 1.0 HD22 A:ASN302 4.3 58.8 1.0 H A:THR307 4.4 30.6 1.0 CB A:ALA336 4.5 31.4 1.0 O2A A:GCP501 4.5 56.4 1.0 OE1 A:GLN339 4.6 55.6 1.0 CA A:THR307 4.7 30.5 1.0 HG22 A:THR307 4.7 40.4 1.0 O2B A:GCP501 4.7 54.5 1.0 HD21 A:ASN302 4.9 58.8 1.0 H3B2 A:GCP501 4.9 79.0 1.0 N A:THR307 4.9 25.5 1.0 HA A:THR307 4.9 36.6 1.0 ND2 A:ASN302 4.9 49.0 1.0 CA A:ALA336 4.9 29.1 1.0 HE22 A:GLN339 5.0 69.8 1.0

Magnesium binding site 2 out of 5 in the Ftsy-Ng High-Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ftsy-Ng High-Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:83.5 occ:1.00 HB3 A:GLU230 1.8 44.3 1.0 O A:HOH693 1.9 34.8 1.0 HA A:GLU230 2.0 44.6 1.0 O A:GLU230 2.0 27.3 1.0 CA A:GLU230 2.2 37.2 1.0 C A:GLU230 2.3 29.5 1.0 CB A:GLU230 2.4 36.9 1.0 HB3 A:GLU233 3.0 33.4 1.0 HD11 A:LEU217 3.0 45.3 1.0 HB2 A:GLU230 3.1 44.3 1.0 HG2 A:GLU230 3.2 57.0 1.0 CG A:GLU230 3.4 47.5 1.0 N A:LEU231 3.5 25.3 1.0 OE1 A:GLU233 3.6 25.0 1.0 N A:GLU230 3.7 22.4 1.0 H A:GLN234 3.7 33.9 1.0 O A:HOH731 3.7 34.8 1.0 HB2 A:GLN234 3.8 28.3 1.0 HD13 A:LEU217 3.8 45.3 1.0 CD1 A:LEU217 3.9 37.8 1.0 HD21 A:LEU217 3.9 47.0 1.0 CB A:GLU233 4.0 27.8 1.0 OE1 A:GLU230 4.0 47.4 1.0 H A:LEU231 4.0 30.4 1.0 HG3 A:GLU230 4.1 57.0 1.0 HA A:LEU231 4.1 29.2 1.0 H A:GLU230 4.2 26.8 1.0 CD A:GLU230 4.2 49.2 1.0 O A:GLU229 4.3 29.8 1.0 H A:GLU233 4.3 38.0 1.0 HB2 A:GLU233 4.3 33.4 1.0 O A:HOH758 4.3 50.0 1.0 N A:GLN234 4.4 28.3 1.0 CA A:LEU231 4.4 24.4 1.0 C A:GLU229 4.4 22.1 1.0 HD12 A:LEU217 4.4 45.3 1.0 CD A:GLU233 4.5 40.2 1.0 HD22 A:LEU217 4.6 47.0 1.0 CD2 A:LEU217 4.6 39.2 1.0 CG A:GLU233 4.7 28.8 1.0 CB A:GLN234 4.7 23.6 1.0 HG2 A:GLU233 4.7 34.6 1.0 N A:GLU233 4.8 31.6 1.0 CG A:LEU217 4.8 39.8 1.0 HB3 A:GLN234 4.8 28.3 1.0 CA A:GLU233 4.8 36.5 1.0 C A:LEU231 4.9 26.1 1.0

Magnesium binding site 3 out of 5 in the Ftsy-Ng High-Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ftsy-Ng High-Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg504 b:60.0 occ:1.00 OE2 A:GLU229 2.1 58.4 1.0 HB2 A:GLU229 2.7 35.4 1.0 HB3 A:GLU229 2.7 35.4 1.0 CB A:GLU229 3.1 29.5 1.0 CD A:GLU229 3.2 48.8 1.0 HA A:ASP226 3.7 42.5 1.0 CG A:GLU229 3.7 38.2 1.0 OE1 A:GLU229 4.3 50.9 1.0 OD1 A:ASP226 4.3 52.1 1.0 HG3 A:GLU229 4.3 45.8 1.0 HG2 A:GLU229 4.4 45.8 1.0 O A:ASP226 4.4 28.6 1.0 CA A:GLU229 4.4 32.7 1.0 CA A:ASP226 4.6 35.4 1.0 C A:GLU229 4.6 22.1 1.0 H A:GLU230 4.7 26.8 1.0 HG3 A:GLU230 4.8 57.0 1.0 N A:GLU230 4.8 22.4 1.0 HB3 A:ASP226 4.8 43.2 1.0 CG A:ASP226 4.9 49.7 1.0 C A:ASP226 5.0 31.0 1.0

Magnesium binding site 4 out of 5 in the Ftsy-Ng High-Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ftsy-Ng High-Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:28.2 occ:1.00 O2B B:GCP501 2.0 25.4 1.0 O B:HOH746 2.0 36.8 1.0 O2G B:GCP501 2.1 27.0 1.0 OG1 B:THR307 2.1 28.0 1.0 O B:HOH655 2.1 25.8 1.0 O B:HOH687 2.2 37.1 1.0 HG1 B:THR307 2.7 33.6 1.0 HB B:THR307 2.9 29.9 1.0 CB B:THR307 3.0 24.9 1.0 HH22 B:ARG333 3.1 31.5 1.0 PG B:GCP501 3.3 32.5 1.0 PB B:GCP501 3.3 34.0 1.0 H B:THR307 3.5 27.4 1.0 C3B B:GCP501 3.6 40.7 1.0 H3B2 B:GCP501 3.6 48.9 1.0 HG21 B:THR307 3.7 35.5 1.0 HH21 B:ARG333 3.7 31.5 1.0 NH2 B:ARG333 3.8 26.2 1.0 O3G B:GCP501 3.9 34.6 1.0 CG2 B:THR307 4.0 29.6 1.0 N B:THR307 4.1 22.9 1.0 O1A B:GCP501 4.1 39.4 1.0 CA B:THR307 4.2 25.0 1.0 O1B B:GCP501 4.2 36.6 1.0 O B:HOH650 4.3 25.4 1.0 O B:HOH645 4.3 22.6 1.0 HG23 B:THR307 4.4 35.5 1.0 O B:HOH639 4.4 24.0 1.0 O3A B:GCP501 4.5 33.0 1.0 O1G B:GCP501 4.5 39.8 1.0 H3B1 B:GCP501 4.5 48.9 1.0 HA B:THR307 4.5 30.1 1.0 O2A B:GCP501 4.7 28.5 1.0 PA B:GCP501 4.7 43.8 1.0 HB2 B:ALA336 4.7 28.4 1.0 HG22 B:THR307 4.7 35.5 1.0 HB3 B:LYS306 4.8 27.9 1.0 CZ B:ARG333 5.0 21.8 1.0

Magnesium binding site 5 out of 5 in the Ftsy-Ng High-Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ftsy-Ng High-Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg504 b:35.1 occ:1.00 O B:HOH606 1.9 49.7 1.0 OD1 B:ASP283 2.2 26.1 1.0 O B:HOH722 2.4 25.9 1.0 O B:PHE483 2.5 17.5 1.0 HG3 B:PRO285 2.8 36.1 1.0 O A:HOH757 2.9 25.9 1.0 HD3 B:PRO285 3.1 30.4 1.0 HA B:LYS484 3.2 24.0 1.0 CG B:ASP283 3.3 22.1 1.0 HA B:ASP283 3.4 24.8 1.0 CG B:PRO285 3.6 30.1 1.0 CD B:PRO285 3.6 25.3 1.0 O B:HOH728 3.6 23.5 1.0 C B:ASP283 3.6 27.6 1.0 C B:PHE483 3.6 14.9 1.0 N B:GLU284 3.6 20.2 1.0 N B:PRO285 3.7 22.1 1.0 H B:GLU284 3.8 24.2 1.0 HA B:PRO285 3.9 21.2 1.0 CA B:ASP283 3.9 20.7 1.0 HD2 B:PHE483 3.9 21.6 1.0 C B:GLU284 3.9 21.9 1.0 O B:ASP283 4.0 31.7 1.0 H B:ALA485 4.0 22.9 1.0 HG2 B:LYS484 4.1 28.3 1.0 OD2 B:ASP283 4.1 26.7 1.0 CA B:LYS484 4.1 20.0 1.0 HA B:GLU284 4.1 24.4 1.0 CA B:GLU284 4.2 20.3 1.0 CB B:ASP283 4.2 19.4 1.0 CA B:PRO285 4.2 17.7 1.0 HG2 B:PRO285 4.3 36.1 1.0 HA2 A:GLY195 4.3 35.8 1.0 N B:LYS484 4.3 14.4 1.0 HB3 B:PHE483 4.4 26.8 1.0 CB B:PRO285 4.4 21.4 1.0 O B:HOH648 4.4 22.4 1.0 HB3 B:PRO285 4.5 25.7 1.0 HD2 B:PRO285 4.5 30.4 1.0 CD2 B:PHE483 4.5 18.0 1.0 O B:GLU284 4.5 22.5 1.0 N A:GLY195 4.6 25.7 1.0 HB3 B:ASP283 4.7 23.2 1.0 N B:ALA485 4.7 19.1 1.0 CA B:PHE483 4.8 19.5 1.0 CG B:LYS484 4.8 23.6 1.0 HB2 B:ASP283 4.9 23.2 1.0 O B:ILE468 4.9 17.9 1.0 CB B:PHE483 4.9 22.3 1.0 O B:HOH837 4.9 34.3 1.0 HG3 B:LYS484 5.0 28.3 1.0 CA A:GLY195 5.0 29.8 1.0 C B:LYS484 5.0 17.8 1.0 CB B:LYS484 5.0 21.2 1.0

C.Faoro, S.F.Ataide. Structural Insights Into the G-Loop Dynamics of E. Coli Ftsy Ng Domain. J.Struct.Biol. V. 208 2019.
ISSN: ESSN 1095-8657
PubMed: 31520694
DOI: 10.1016/J.JSB.2019.09.004