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Magnesium in PDB 6n7w: Structure of Bacteriophage T7 Leading-Strand Dna Polymerase (D5A/E7A) /Trx in Complex with A Dna Fork and Incoming Dttp (From Multiple Lead Complexes)

Enzymatic activity of Structure of Bacteriophage T7 Leading-Strand Dna Polymerase (D5A/E7A) /Trx in Complex with A Dna Fork and Incoming Dttp (From Multiple Lead Complexes)

All present enzymatic activity of Structure of Bacteriophage T7 Leading-Strand Dna Polymerase (D5A/E7A) /Trx in Complex with A Dna Fork and Incoming Dttp (From Multiple Lead Complexes):
2.7.7.7;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Bacteriophage T7 Leading-Strand Dna Polymerase (D5A/E7A) /Trx in Complex with A Dna Fork and Incoming Dttp (From Multiple Lead Complexes) (pdb code 6n7w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Bacteriophage T7 Leading-Strand Dna Polymerase (D5A/E7A) /Trx in Complex with A Dna Fork and Incoming Dttp (From Multiple Lead Complexes), PDB code: 6n7w:

Magnesium binding site 1 out of 1 in 6n7w

Go back to Magnesium Binding Sites List in 6n7w
Magnesium binding site 1 out of 1 in the Structure of Bacteriophage T7 Leading-Strand Dna Polymerase (D5A/E7A) /Trx in Complex with A Dna Fork and Incoming Dttp (From Multiple Lead Complexes)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bacteriophage T7 Leading-Strand Dna Polymerase (D5A/E7A) /Trx in Complex with A Dna Fork and Incoming Dttp (From Multiple Lead Complexes) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg4001

b:90.7
occ:1.00
OD2 H:ASP654 2.1 88.8 1.0
O H:ALA476 2.3 93.5 1.0
O3G H:TTP4002 2.3 86.3 1.0
O2A H:TTP4002 2.4 86.3 1.0
O2B H:TTP4002 2.6 86.3 1.0
OD1 H:ASP475 2.6 91.9 1.0
PG H:TTP4002 3.3 86.3 1.0
CG H:ASP654 3.3 88.8 1.0
CG H:ASP475 3.4 91.9 1.0
OD2 H:ASP475 3.5 91.9 1.0
C H:ALA476 3.5 93.5 1.0
PB H:TTP4002 3.5 86.3 1.0
O1G H:TTP4002 3.5 86.3 1.0
PA H:TTP4002 3.6 86.3 1.0
O3B H:TTP4002 3.7 86.3 1.0
O3A H:TTP4002 3.9 86.3 1.0
N H:ALA476 4.1 93.5 1.0
CB H:ASP654 4.2 88.8 1.0
OD1 H:ASP654 4.2 88.8 1.0
O H:ASP654 4.3 88.8 1.0
CA H:ALA476 4.3 93.5 1.0
O1A H:TTP4002 4.4 86.3 1.0
N H:SER477 4.5 99.9 1.0
CA H:SER477 4.6 99.9 1.0
O2G H:TTP4002 4.7 86.3 1.0
CB H:ASP475 4.8 91.9 1.0
CB H:ALA476 4.8 93.5 1.0
O5' H:TTP4002 4.8 86.3 1.0
C5' H:TTP4002 4.8 86.3 1.0
O1B H:TTP4002 4.9 86.3 1.0

Reference:

Y.Gao, Y.Cui, T.Fox, S.Lin, H.Wang, N.De Val, Z.H.Zhou, W.Yang. Structures and Operating Principles of the Replisome. Science V. 363 2019.
ISSN: ESSN 1095-9203
PubMed: 30679383
DOI: 10.1126/SCIENCE.AAV7003
Page generated: Tue Oct 1 12:34:28 2024

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