Magnesium in PDB 6nab: Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp)

The structure of Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp), PDB code: 6nab was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.37 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	156.930, 66.100, 112.980, 90.00, 102.03, 90.00
R / Rfree (%)	15.1 / 19.2

The binding sites of Magnesium atom in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp) (pdb code 6nab). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp), PDB code: 6nab:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:36.3 occ:1.00 O A:HOH701 2.2 35.0 1.0 O A:HOH1111 2.2 37.8 1.0 O A:HOH733 2.3 25.0 1.0 O A:HOH1008 2.3 19.4 0.5 O A:HOH780 2.3 31.1 1.0 O A:HOH714 2.4 30.0 1.0 O A:HOH1008 3.8 20.6 0.5 NH1 A:ARG142 4.0 20.6 1.0 O1P A:AMP601 4.2 25.9 1.0 OE2 A:GLU90 4.2 39.2 1.0 OE2 A:GLU144 4.2 29.9 1.0 OE1 A:GLU90 4.3 35.7 1.0 OE1 A:GLU144 4.5 26.9 1.0 NH1 A:ARG153 4.5 25.5 1.0 N7 A:AMP601 4.5 19.3 1.0 CD A:GLU90 4.7 43.3 1.0 CD A:GLU144 4.8 33.4 1.0 CD A:ARG142 4.8 20.1 1.0 C8 A:AMP601 5.0 21.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:34.4 occ:1.00 O B:HOH786 2.1 29.4 1.0 O B:HOH788 2.1 29.1 1.0 O B:HOH707 2.1 31.0 1.0 O B:HOH761 2.2 25.6 1.0 O B:HOH1053 2.3 38.5 1.0 O B:HOH949 2.3 16.1 0.5 O B:HOH949 3.7 16.9 0.5 NH1 B:ARG142 4.0 23.0 1.0 O B:HOH1046 4.1 58.2 1.0 OE1 B:GLU90 4.2 44.7 1.0 OE2 B:GLU144 4.2 27.3 1.0 O B:HOH723 4.2 47.8 1.0 O2P B:AMP601 4.2 26.2 1.0 OE2 B:GLU90 4.3 33.0 1.0 NH1 B:ARG153 4.4 27.2 1.0 OE1 B:GLU144 4.4 27.8 1.0 N7 B:AMP601 4.6 18.3 1.0 CD B:GLU90 4.7 41.4 1.0 CD B:GLU144 4.8 33.7 1.0 CD B:ARG142 4.9 17.4 1.0

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Proline and Adenosine Monophophsphate (Amp) To Be Published.