Magnesium in PDB 6nak: Bacterial Protein Complex Tm Bde Complex

All present enzymatic activity of Bacterial Protein Complex Tm Bde Complex:
2.3.1.234;

The structure of Bacterial Protein Complex Tm Bde Complex, PDB code: 6nak was solved by B.Stec, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.40 / 3.14
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	84.31, 113.99, 177.57, 90, 90, 90
R / Rfree (%)	19.2 / 30.2

The structure of Bacterial Protein Complex Tm Bde Complex also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Bacterial Protein Complex Tm Bde Complex (pdb code 6nak). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Bacterial Protein Complex Tm Bde Complex, PDB code: 6nak:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Bacterial Protein Complex Tm Bde Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bacterial Protein Complex Tm Bde Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg200 b:61.8 occ:1.00 O1G D:APC201 2.0 83.1 1.0 OG1 D:THR42 2.0 97.5 1.0 OE2 D:GLU108 2.2 95.0 1.0 O2B D:APC201 2.6 78.4 1.0 PG D:APC201 3.0 85.7 1.0 CD D:GLU108 3.2 93.7 1.0 PB D:APC201 3.3 77.9 1.0 O2G D:APC201 3.3 85.1 1.0 C3A D:APC201 3.4 83.2 1.0 CB D:THR42 3.4 96.6 1.0 OG D:SER61 3.4 91.5 1.0 O3B D:APC201 3.4 79.4 1.0 OE1 D:GLU108 3.8 92.1 1.0 OD2 D:ASP80 3.8 85.7 1.0 CB D:SER61 4.0 95.2 1.0 N D:THR42 4.1 97.2 1.0 NZ B:LYS166 4.2 89.0 1.0 CG2 D:THR42 4.2 96.9 1.0 O2A D:APC201 4.2 86.6 1.0 CA D:THR42 4.3 97.1 1.0 CG D:GLU108 4.4 92.7 1.0 O3G D:APC201 4.4 91.5 1.0 PA D:APC201 4.4 84.9 1.0 CA D:SER61 4.6 94.4 1.0 O1B D:APC201 4.7 81.0 1.0 O1A D:APC201 4.8 79.9 1.0 OE1 B:GLU162 4.8 99.0 1.0 OG1 D:THR63 4.9 75.8 1.0

Magnesium binding site 2 out of 2 in the Bacterial Protein Complex Tm Bde Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bacterial Protein Complex Tm Bde Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg200 b:39.9 occ:1.00 OG1 E:THR42 2.0 61.2 1.0 OE2 E:GLU108 2.2 63.5 1.0 O2G E:APC201 2.4 71.6 1.0 O2B E:APC201 2.4 62.9 1.0 CD E:GLU108 3.0 63.1 1.0 OG E:SER61 3.2 70.0 1.0 OE1 E:GLU108 3.2 61.7 1.0 CB E:THR42 3.3 63.5 1.0 OD2 E:ASP80 3.4 58.8 1.0 PB E:APC201 3.7 64.6 1.0 CB E:SER61 3.8 67.5 1.0 CG2 E:THR42 3.8 63.9 1.0 PG E:APC201 3.8 71.1 1.0 CA E:SER61 4.0 64.6 1.0 O3B E:APC201 4.1 66.8 1.0 O1A E:APC201 4.1 67.2 1.0 CA E:THR42 4.3 63.6 1.0 N E:THR42 4.4 65.1 1.0 OG1 E:THR63 4.4 60.0 1.0 CG E:GLU108 4.5 62.2 1.0 O1G E:APC201 4.5 70.2 1.0 OE1 G:GLU162 4.6 74.2 1.0 CG E:ASP80 4.6 58.9 1.0 CD E:PRO62 4.7 62.8 1.0 O1B E:APC201 4.7 66.6 1.0 O3G E:APC201 4.8 72.8 1.0 NZ G:LYS166 4.9 72.9 1.0 PA E:APC201 4.9 68.4 1.0 N E:SER61 5.0 63.0 1.0 C3A E:APC201 5.0 65.5 1.0

B.Stec, B.Stec. N/A N/A.
ISSN: ESSN 2673-4125
DOI: 10.3390/BIOPHYSICA3020019