Atomistry » Magnesium » PDB 6n7e-6njv » 6nbm
Atomistry »
  Magnesium »
    PDB 6n7e-6njv »
      6nbm »

Magnesium in PDB 6nbm: Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium

Enzymatic activity of Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium

All present enzymatic activity of Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium:
4.2.1.11;

Protein crystallography data

The structure of Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium, PDB code: 6nbm was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.19 / 1.90
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 116.770, 116.770, 142.770, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 19.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium (pdb code 6nbm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium, PDB code: 6nbm:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6nbm

Go back to Magnesium Binding Sites List in 6nbm
Magnesium binding site 1 out of 4 in the Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:18.9
occ:1.00
 O A:HOH962 2.0 18.9 1.0
O A:HOH809 2.1 23.2 1.0
OE2 A:GLU292 2.1 24.7 1.0
O A:HOH828 2.1 22.2 1.0
OD2 A:ASP319 2.1 25.8 1.0
OD2 A:ASP249 2.2 24.1 1.0
CG A:ASP249 3.1 24.0 1.0
CG A:ASP319 3.2 28.3 1.0
CD A:GLU292 3.2 27.4 1.0
OD1 A:ASP249 3.3 25.1 1.0
MG A:MG702 3.6 22.0 1.0
NZ A:LYS395 3.6 24.3 1.0
NZ A:LYS344 3.7 29.8 1.0
O A:HOH821 3.8 19.2 1.0
O A:HOH860 3.8 20.4 1.0
CB A:ASP319 3.8 28.0 1.0
NE2 A:GLN170 3.8 21.1 1.0
OE1 A:GLU292 4.0 26.0 1.0
CD2 A:LEU342 4.1 27.5 1.0
CG A:GLU292 4.2 24.1 1.0
OD1 A:ASP319 4.2 23.6 1.0
O3 A:PO4703 4.3 23.4 1.0
OD2 A:ASP293 4.3 29.4 1.0
CB A:ASP249 4.4 23.7 1.0
OE2 A:GLU171 4.5 26.0 1.0
O1 A:PO4703 4.7 24.0 1.0
CE A:LYS344 4.8 23.1 1.0
CD A:GLN170 4.9 21.0 1.0
OG A:SER49 5.0 29.6 1.0

Magnesium binding site 2 out of 4 in 6nbm

Go back to Magnesium Binding Sites List in 6nbm
Magnesium binding site 2 out of 4 in the Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg702

b:22.0
occ:1.00
 O A:HOH962 1.9 18.9 1.0
O1 A:PO4703 2.0 24.0 1.0
O A:HOH860 2.1 20.4 1.0
OG A:SER49 2.1 29.6 1.0
O A:HOH821 2.1 19.2 1.0
O A:SER49 2.2 27.4 1.0
CB A:SER49 3.1 30.7 1.0
C A:SER49 3.1 28.6 1.0
P A:PO4703 3.2 24.9 1.0
O3 A:PO4703 3.4 23.4 1.0
CA A:SER49 3.6 30.9 1.0
MG A:MG701 3.6 18.9 1.0
OD2 A:ASP319 3.7 25.8 1.0
O4 A:PO4703 3.8 24.1 1.0
NZ A:LYS344 3.9 29.8 1.0
O A:HOH828 3.9 22.2 1.0
N A:SER49 4.0 26.4 1.0
NE2 A:GLN170 4.1 21.1 1.0
O A:HOH809 4.1 23.2 1.0
OE1 A:GLN170 4.1 21.9 1.0
OD1 A:ASP320 4.2 29.4 1.0
OD2 A:ASP320 4.3 28.5 1.0
N A:THR50 4.3 25.4 1.0
NH2 A:ARG373 4.3 24.8 1.0
O2 A:PO4703 4.4 24.0 1.0
CD A:GLN170 4.6 21.0 1.0
CG A:ASP320 4.6 31.0 1.0
CG A:ASP319 4.8 28.3 1.0
CA A:THR50 4.8 28.2 1.0

Magnesium binding site 3 out of 4 in 6nbm

Go back to Magnesium Binding Sites List in 6nbm
Magnesium binding site 3 out of 4 in the Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg701

b:19.0
occ:1.00
 O B:HOH805 2.0 18.8 1.0
O B:HOH965 2.0 15.9 1.0
OE2 B:GLU292 2.0 25.7 1.0
OD2 B:ASP319 2.1 27.3 1.0
OD2 B:ASP249 2.2 22.9 1.0
O B:HOH828 2.3 21.9 1.0
CG B:ASP249 3.1 26.3 1.0
CG B:ASP319 3.2 24.9 1.0
CD B:GLU292 3.2 27.9 1.0
OD1 B:ASP249 3.4 24.3 1.0
NZ B:LYS344 3.6 22.7 1.0
NZ B:LYS395 3.6 21.1 1.0
MG B:MG702 3.6 20.1 1.0
CB B:ASP319 3.8 23.8 1.0
NE2 B:GLN170 3.8 22.0 1.0
O B:HOH809 3.8 22.1 1.0
O B:HOH847 3.9 21.5 1.0
OE1 B:GLU292 4.0 25.0 1.0
CD2 B:LEU342 4.1 21.1 1.0
OD1 B:ASP319 4.2 26.3 1.0
O3 B:PO4703 4.2 19.3 1.0
CG B:GLU292 4.3 25.8 1.0
OD2 B:ASP293 4.3 23.4 1.0
CB B:ASP249 4.4 24.9 1.0
OE2 B:GLU171 4.5 22.6 1.0
O4 B:PO4703 4.7 23.9 1.0
CE B:LYS344 4.8 21.1 1.0
O B:HOH808 4.9 21.6 1.0
CD B:GLN170 4.9 19.0 1.0
CE B:LYS395 5.0 19.9 1.0

Magnesium binding site 4 out of 4 in 6nbm

Go back to Magnesium Binding Sites List in 6nbm
Magnesium binding site 4 out of 4 in the Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg702

b:20.1
occ:1.00
 O B:HOH965 1.9 15.9 1.0
O B:SER49 2.1 23.6 1.0
O4 B:PO4703 2.1 23.9 1.0
O B:HOH847 2.1 21.5 1.0
OG B:SER49 2.2 20.5 1.0
O B:HOH809 2.2 22.1 1.0
C B:SER49 3.1 26.9 1.0
CB B:SER49 3.1 17.6 1.0
P B:PO4703 3.2 22.3 1.0
O3 B:PO4703 3.4 19.3 1.0
CA B:SER49 3.6 24.5 1.0
OD2 B:ASP319 3.6 27.3 1.0
MG B:MG701 3.6 19.0 1.0
O1 B:PO4703 3.9 23.9 1.0
NZ B:LYS344 3.9 22.7 1.0
O B:HOH828 4.0 21.9 1.0
N B:SER49 4.0 21.8 1.0
NE2 B:GLN170 4.1 22.0 1.0
O B:HOH805 4.1 18.8 1.0
OD1 B:ASP320 4.1 26.0 1.0
OE1 B:GLN170 4.1 22.7 1.0
OD2 B:ASP320 4.2 28.1 1.0
N B:THR50 4.3 25.9 1.0
NH2 B:ARG373 4.3 24.4 1.0
O2 B:PO4703 4.5 21.7 1.0
CG B:ASP320 4.6 29.1 1.0
CD B:GLN170 4.6 19.0 1.0
CG B:ASP319 4.7 24.9 1.0
CA B:THR50 4.8 28.2 1.0

Reference:

D.R.Davies, D.G.Conrady, D.D.Lorimer, T.E.Edwards, P.S.Horanyi. Crystal Structure of Enolase From Legionella Pneumophila Bound to Phosphate and Magnesium To Be Published.
Page generated: Tue Oct 1 12:38:22 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy