Atomistry » Magnesium » PDB 6n7e-6njv » 6nfp
Atomistry »
  Magnesium »
    PDB 6n7e-6njv »
      6nfp »

Magnesium in PDB 6nfp: 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168

Enzymatic activity of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168

All present enzymatic activity of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168:
3.5.3.1;

Protein crystallography data

The structure of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168, PDB code: 6nfp was solved by G.Minasov, Z.Wawrzak, E.Evdokimova, S.Grimshaw, K.Kwon, A.Savchenko, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.99 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.414, 143.989, 85.515, 90.00, 109.35, 90.00
R / Rfree (%) 13.9 / 16.6

Other elements in 6nfp:

The structure of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 also contains other interesting chemical elements:

Chlorine (Cl) 10 atoms
Sodium (Na) 3 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 (pdb code 6nfp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168, PDB code: 6nfp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 1 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg306

b:30.8
occ:0.50
 O1 A:SO4318 2.1 48.3 1.0
OD2 A:ASP225 2.1 29.0 1.0
OD1 A:ASP120 2.1 25.8 1.0
ND1 A:HIS122 2.3 28.7 1.0
OD2 A:ASP223 2.6 28.4 1.0
CG A:ASP225 2.8 22.7 1.0
OD1 A:ASP225 2.8 23.4 1.0
MG A:MG307 2.9 34.2 0.5
CG A:ASP120 3.1 26.3 1.0
S A:SO4318 3.1 92.1 1.0
CG A:HIS122 3.2 26.8 1.0
O3 A:SO4318 3.2 80.9 1.0
CE1 A:HIS122 3.3 29.1 1.0
OD2 A:ASP120 3.4 30.7 1.0
CB A:HIS122 3.4 27.0 1.0
CG A:ASP223 3.4 24.6 1.0
N A:HIS122 3.8 23.3 1.0
OD1 A:ASP223 3.9 24.8 1.0
O2 A:SO4318 3.9 73.5 1.0
CA A:HIS122 4.2 25.2 1.0
O4 A:SO4318 4.2 66.7 1.0
CB A:ASP225 4.2 20.8 1.0
N A:ALA121 4.3 22.1 1.0
CD2 A:HIS122 4.3 28.9 1.0
NE2 A:HIS122 4.4 28.6 1.0
CB A:ASP223 4.4 24.0 1.0
O A:HOH468 4.4 25.0 1.0
OD2 A:ASP124 4.4 34.0 1.0
CB A:ASP120 4.5 22.8 1.0
CB A:ALA121 4.7 22.2 1.0
OD1 A:ASP124 4.7 28.4 1.0
C A:ALA121 4.7 23.1 1.0
CA A:ALA121 4.8 21.8 1.0
O A:HIS122 4.9 25.5 1.0
ND1 A:HIS97 4.9 28.4 1.0
CA A:ASP120 4.9 22.1 1.0
CG A:ASP124 5.0 28.7 1.0
C A:ASP120 5.0 22.2 1.0

Magnesium binding site 2 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 2 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg307

b:34.2
occ:0.50
 O1 A:SO4318 2.0 48.3 1.0
OD2 A:ASP120 2.1 30.7 1.0
OD2 A:ASP124 2.1 34.0 1.0
ND1 A:HIS97 2.3 28.4 1.0
OD2 A:ASP223 2.4 28.4 1.0
MG A:MG306 2.9 30.8 0.5
CG A:ASP120 3.0 26.3 1.0
CG A:HIS97 3.2 24.7 1.0
CG A:ASP124 3.2 28.7 1.0
OD1 A:ASP120 3.2 25.8 1.0
CE1 A:HIS97 3.3 26.6 1.0
S A:SO4318 3.3 92.1 1.0
CB A:HIS97 3.3 24.5 1.0
OD1 A:ASP124 3.6 28.4 1.0
CG A:ASP223 3.6 24.6 1.0
O4 A:SO4318 3.7 66.7 1.0
O2 A:SO4318 4.0 73.5 1.0
CB A:ASP223 4.1 24.0 1.0
CD2 A:HIS97 4.3 24.8 1.0
NE2 A:HIS97 4.4 24.6 1.0
O3 A:SO4318 4.4 80.9 1.0
CB A:ASP120 4.4 22.8 1.0
CB A:HIS122 4.5 27.0 1.0
CB A:ASP124 4.5 27.1 1.0
OD2 A:ASP225 4.6 29.0 1.0
O A:HIS137 4.6 22.4 1.0
OD1 A:ASP223 4.6 24.8 1.0
ND1 A:HIS122 4.7 28.7 1.0
NE1 A:TRP118 4.7 27.4 1.0
CZ2 A:TRP118 4.8 25.3 1.0
O A:HIS122 4.8 25.5 1.0
CA A:HIS97 4.8 22.4 1.0
CG A:GLU268 4.9 22.6 1.0
OD1 A:ASP225 4.9 23.4 1.0

Magnesium binding site 3 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 3 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:30.2
occ:0.50
 O2 B:SO4313 2.1 37.8 0.5
OD2 B:ASP225 2.1 32.3 1.0
OD1 B:ASP120 2.1 26.9 1.0
ND1 B:HIS122 2.3 34.3 1.0
OD2 B:ASP223 2.7 30.2 1.0
CG B:ASP225 2.8 27.2 1.0
OD1 B:ASP225 2.9 26.7 1.0
MG B:MG304 2.9 32.1 0.5
CG B:ASP120 3.1 27.3 1.0
S B:SO4313 3.1 56.3 0.5
O3 B:SO4313 3.1 49.3 0.5
CG B:HIS122 3.2 30.3 1.0
CE1 B:HIS122 3.2 32.4 1.0
OD2 B:ASP120 3.4 30.4 1.0
CB B:HIS122 3.4 28.1 1.0
CG B:ASP223 3.5 27.1 1.0
O1 B:SO4313 3.9 45.9 0.5
N B:HIS122 3.9 24.2 1.0
OD1 B:ASP223 4.0 25.6 1.0
O4 B:SO4313 4.2 44.9 0.5
CA B:HIS122 4.3 26.2 1.0
CB B:ASP225 4.3 23.8 1.0
CD2 B:HIS122 4.3 32.3 1.0
O B:HOH456 4.3 29.0 1.0
NE2 B:HIS122 4.3 32.0 1.0
N B:ALA121 4.4 22.8 1.0
CB B:ASP223 4.4 25.4 1.0
OD2 B:ASP124 4.5 33.8 1.0
CB B:ASP120 4.5 23.7 1.0
OD1 B:ASP124 4.6 31.1 1.0
C B:ALA121 4.8 24.5 1.0
CB B:ALA121 4.8 23.3 1.0
ND1 B:HIS97 4.9 27.1 1.0
O B:HIS122 4.9 27.2 1.0
CG B:ASP124 4.9 28.9 1.0
CA B:ALA121 5.0 22.9 1.0
CA B:ASP120 5.0 22.6 1.0

Magnesium binding site 4 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 4 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg304

b:32.1
occ:0.50
 O2 B:SO4313 2.0 37.8 0.5
OD2 B:ASP120 2.1 30.4 1.0
OD2 B:ASP124 2.2 33.8 1.0
ND1 B:HIS97 2.3 27.1 1.0
OD2 B:ASP223 2.5 30.2 1.0
MG B:MG303 2.9 30.2 0.5
CG B:ASP120 3.1 27.3 1.0
CG B:HIS97 3.1 25.6 1.0
CG B:ASP124 3.2 28.9 1.0
CB B:HIS97 3.2 24.3 1.0
OD1 B:ASP120 3.3 26.9 1.0
S B:SO4313 3.3 56.3 0.5
CE1 B:HIS97 3.3 26.1 1.0
O4 B:SO4313 3.6 44.9 0.5
OD1 B:ASP124 3.6 31.1 1.0
CG B:ASP223 3.7 27.1 1.0
O1 B:SO4313 4.1 45.9 0.5
CB B:ASP223 4.1 25.4 1.0
CD2 B:HIS97 4.3 23.6 1.0
O3 B:SO4313 4.3 49.3 0.5
NE2 B:HIS97 4.4 23.6 1.0
CB B:ASP120 4.4 23.7 1.0
O B:HIS137 4.5 25.1 1.0
CB B:ASP124 4.5 28.4 1.0
CB B:HIS122 4.6 28.1 1.0
NE1 B:TRP118 4.6 25.7 1.0
CZ2 B:TRP118 4.6 23.8 1.0
OD2 B:ASP225 4.7 32.3 1.0
CA B:HIS97 4.7 24.0 1.0
OD1 B:ASP223 4.7 25.6 1.0
ND1 B:HIS122 4.8 34.3 1.0
O B:HIS122 4.9 27.2 1.0
CG B:GLU268 4.9 24.2 1.0
CE2 B:TRP118 4.9 24.4 1.0
OE2 B:GLU268 5.0 27.8 1.0

Magnesium binding site 5 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 5 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg304

b:29.2
occ:0.50
 O4 C:SO4318 2.1 40.3 0.5
OD2 C:ASP225 2.1 29.7 1.0
OD1 C:ASP120 2.1 27.0 1.0
ND1 C:HIS122 2.3 30.5 1.0
OD2 C:ASP223 2.6 30.7 1.0
CG C:ASP225 2.8 25.4 1.0
MG C:MG305 2.8 34.0 0.5
OD1 C:ASP225 2.8 25.6 1.0
CG C:ASP120 3.1 26.0 1.0
S C:SO4318 3.2 59.9 0.5
CG C:HIS122 3.2 28.5 1.0
CE1 C:HIS122 3.2 30.1 1.0
O2 C:SO4318 3.3 55.2 0.5
OD2 C:ASP120 3.4 30.5 1.0
CG C:ASP223 3.4 26.2 1.0
CB C:HIS122 3.5 27.5 1.0
N C:HIS122 3.9 25.0 1.0
O1 C:SO4318 3.9 52.1 0.5
OD1 C:ASP223 4.0 28.0 1.0
O3 C:SO4318 4.3 52.7 0.5
CA C:HIS122 4.3 26.8 1.0
CB C:ASP225 4.3 23.1 1.0
N C:ALA121 4.3 21.9 1.0
NE2 C:HIS122 4.3 30.5 1.0
CD2 C:HIS122 4.3 30.0 1.0
CB C:ASP223 4.3 25.0 1.0
O C:HOH482 4.4 25.6 1.0
OD2 C:ASP124 4.5 35.8 1.0
CB C:ASP120 4.5 23.3 1.0
OD1 C:ASP124 4.7 33.3 1.0
CB C:ALA121 4.8 23.3 1.0
ND1 C:HIS97 4.8 29.3 1.0
C C:ALA121 4.8 23.6 1.0
O C:HIS122 4.9 29.2 1.0
CA C:ALA121 4.9 22.5 1.0
CA C:ASP120 5.0 21.9 1.0
CG C:ASP124 5.0 30.4 1.0

Magnesium binding site 6 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 6 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg305

b:34.0
occ:0.50
 O4 C:SO4318 2.0 40.3 0.5
OD2 C:ASP124 2.1 35.8 1.0
OD2 C:ASP120 2.2 30.5 1.0
ND1 C:HIS97 2.3 29.3 1.0
OD2 C:ASP223 2.5 30.7 1.0
MG C:MG304 2.8 29.2 0.5
CG C:ASP120 3.0 26.0 1.0
CG C:HIS97 3.1 24.3 1.0
CG C:ASP124 3.2 30.4 1.0
OD1 C:ASP120 3.2 27.0 1.0
CE1 C:HIS97 3.3 26.0 1.0
S C:SO4318 3.3 59.9 0.5
CB C:HIS97 3.3 22.8 1.0
O3 C:SO4318 3.5 52.7 0.5
OD1 C:ASP124 3.6 33.3 1.0
CG C:ASP223 3.7 26.2 1.0
O1 C:SO4318 4.1 52.1 0.5
CB C:ASP223 4.1 25.0 1.0
O2 C:SO4318 4.3 55.2 0.5
CD2 C:HIS97 4.3 23.4 1.0
NE2 C:HIS97 4.4 24.6 1.0
CB C:ASP120 4.4 23.3 1.0
CB C:HIS122 4.5 27.5 1.0
CB C:ASP124 4.5 29.5 1.0
O C:HIS137 4.6 22.9 1.0
NE1 C:TRP118 4.6 28.2 1.0
OD2 C:ASP225 4.6 29.7 1.0
ND1 C:HIS122 4.6 30.5 1.0
CZ2 C:TRP118 4.7 28.1 1.0
OD1 C:ASP223 4.8 28.0 1.0
O C:HIS122 4.8 29.2 1.0
CA C:HIS97 4.9 21.3 1.0
CG C:GLU268 4.9 24.8 1.0
CG C:HIS122 5.0 28.5 1.0
CE2 C:TRP118 5.0 27.0 1.0

Magnesium binding site 7 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 7 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg302

b:31.9
occ:0.50
 O3 D:SO4310 2.0 43.5 0.5
OD1 D:ASP120 2.2 27.9 1.0
OD2 D:ASP225 2.2 31.0 1.0
ND1 D:HIS122 2.3 34.7 1.0
OD2 D:ASP223 2.5 31.6 1.0
CG D:ASP225 2.8 26.4 1.0
OD1 D:ASP225 2.8 27.1 1.0
MG D:MG303 2.9 35.3 0.5
CG D:ASP120 3.1 27.3 1.0
S D:SO4310 3.2 64.1 0.5
CE1 D:HIS122 3.2 34.0 1.0
CG D:HIS122 3.2 31.9 1.0
O1 D:SO4310 3.3 57.3 0.5
OD2 D:ASP120 3.3 31.9 1.0
CG D:ASP223 3.4 28.4 1.0
CB D:HIS122 3.5 29.9 1.0
N D:HIS122 3.9 24.3 1.0
OD1 D:ASP223 3.9 27.3 1.0
O4 D:SO4310 4.0 53.2 0.5
O2 D:SO4310 4.2 50.5 0.5
O D:HOH426 4.3 30.7 1.0
CB D:ASP225 4.3 22.7 1.0
CA D:HIS122 4.3 27.0 1.0
NE2 D:HIS122 4.3 33.2 1.0
N D:ALA121 4.3 23.4 1.0
CD2 D:HIS122 4.3 34.3 1.0
CB D:ASP223 4.4 25.6 1.0
CB D:ASP120 4.5 24.4 1.0
OD2 D:ASP124 4.5 38.4 1.0
OD1 D:ASP124 4.7 32.3 1.0
CB D:ALA121 4.8 22.4 1.0
ND1 D:HIS97 4.8 30.0 1.0
C D:ALA121 4.8 24.6 1.0
CA D:ALA121 4.9 22.5 1.0
O D:HIS122 4.9 29.8 1.0
CA D:ASP120 4.9 23.3 1.0
CG D:ASP124 5.0 33.0 1.0

Magnesium binding site 8 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 8 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg303

b:35.3
occ:0.50
 O3 D:SO4310 2.0 43.5 0.5
OD2 D:ASP120 2.1 31.9 1.0
OD2 D:ASP124 2.2 38.4 1.0
ND1 D:HIS97 2.3 30.0 1.0
OD2 D:ASP223 2.5 31.6 1.0
MG D:MG302 2.9 31.9 0.5
CG D:ASP120 3.1 27.3 1.0
CG D:HIS97 3.1 26.6 1.0
CG D:ASP124 3.2 33.0 1.0
CB D:HIS97 3.2 26.5 1.0
S D:SO4310 3.2 64.1 0.5
OD1 D:ASP120 3.3 27.9 1.0
CE1 D:HIS97 3.3 28.8 1.0
O2 D:SO4310 3.4 50.5 0.5
OD1 D:ASP124 3.6 32.3 1.0
CG D:ASP223 3.6 28.4 1.0
O4 D:SO4310 4.0 53.2 0.5
CB D:ASP223 4.1 25.6 1.0
CD2 D:HIS97 4.3 25.6 1.0
O1 D:SO4310 4.3 57.3 0.5
NE2 D:HIS97 4.4 26.0 1.0
CB D:ASP120 4.5 24.4 1.0
CB D:ASP124 4.5 30.4 1.0
CB D:HIS122 4.5 29.9 1.0
O D:HIS137 4.5 27.1 1.0
NE1 D:TRP118 4.6 28.0 1.0
CZ2 D:TRP118 4.7 27.8 1.0
ND1 D:HIS122 4.7 34.7 1.0
OD2 D:ASP225 4.7 31.0 1.0
OD1 D:ASP223 4.7 27.3 1.0
CA D:HIS97 4.7 25.0 1.0
CG D:GLU268 4.9 23.8 1.0
O D:HIS122 4.9 29.8 1.0
CE2 D:TRP118 5.0 26.6 1.0

Magnesium binding site 9 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 9 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg303

b:34.5
occ:0.50
 O1 E:SO4312 2.1 41.2 0.5
OD2 E:ASP225 2.1 30.5 1.0
OD1 E:ASP120 2.2 28.1 1.0
ND1 E:HIS122 2.3 31.6 1.0
OD2 E:ASP223 2.7 31.4 1.0
CG E:ASP225 2.8 27.5 1.0
MG E:MG304 2.8 35.1 0.5
OD1 E:ASP225 2.9 25.8 1.0
CG E:ASP120 3.0 26.5 1.0
CG E:HIS122 3.2 29.6 1.0
CE1 E:HIS122 3.2 33.1 1.0
S E:SO4312 3.2 57.3 0.5
OD2 E:ASP120 3.3 30.8 1.0
O3 E:SO4312 3.4 52.7 0.5
CB E:HIS122 3.4 29.1 1.0
CG E:ASP223 3.4 26.6 1.0
N E:HIS122 3.9 25.3 1.0
OD1 E:ASP223 4.0 26.1 1.0
O2 E:SO4312 4.0 51.3 0.5
CA E:HIS122 4.3 27.5 1.0
O4 E:SO4312 4.3 48.8 0.5
CD2 E:HIS122 4.3 32.9 1.0
CB E:ASP225 4.3 24.4 1.0
NE2 E:HIS122 4.3 34.2 1.0
CB E:ASP223 4.4 24.2 1.0
N E:ALA121 4.4 22.5 1.0
O E:HOH481 4.4 28.0 1.0
OD2 E:ASP124 4.4 35.4 1.0
CB E:ASP120 4.4 25.2 1.0
OD1 E:ASP124 4.7 30.1 1.0
ND1 E:HIS97 4.8 29.1 1.0
C E:ALA121 4.8 24.8 1.0
O E:HIS122 4.9 29.3 1.0
CB E:ALA121 4.9 24.5 1.0
CG E:ASP124 5.0 31.2 1.0
CA E:ASP120 5.0 22.9 1.0
CA E:ALA121 5.0 22.6 1.0

Magnesium binding site 10 out of 12 in 6nfp

Go back to Magnesium Binding Sites List in 6nfp
Magnesium binding site 10 out of 12 in the 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg304

b:35.1
occ:0.50
 O1 E:SO4312 2.1 41.2 0.5
OD2 E:ASP120 2.1 30.8 1.0
OD2 E:ASP124 2.2 35.4 1.0
ND1 E:HIS97 2.3 29.1 1.0
OD2 E:ASP223 2.5 31.4 1.0
MG E:MG303 2.8 34.5 0.5
CG E:ASP120 3.1 26.5 1.0
CG E:HIS97 3.1 25.2 1.0
CG E:ASP124 3.2 31.2 1.0
CB E:HIS97 3.2 24.3 1.0
S E:SO4312 3.3 57.3 0.5
CE1 E:HIS97 3.3 29.2 1.0
OD1 E:ASP120 3.3 28.1 1.0
O4 E:SO4312 3.5 48.8 0.5
OD1 E:ASP124 3.6 30.1 1.0
CG E:ASP223 3.6 26.6 1.0
O2 E:SO4312 3.9 51.3 0.5
CB E:ASP223 4.1 24.2 1.0
CD2 E:HIS97 4.3 24.6 1.0
O3 E:SO4312 4.3 52.7 0.5
NE2 E:HIS97 4.4 25.2 1.0
CB E:ASP120 4.4 25.2 1.0
CB E:HIS122 4.5 29.1 1.0
CB E:ASP124 4.5 29.3 1.0
O E:HIS137 4.5 27.4 1.0
NE1 E:TRP118 4.6 24.9 1.0
OD2 E:ASP225 4.6 30.5 1.0
ND1 E:HIS122 4.7 31.6 1.0
CZ2 E:TRP118 4.7 25.7 1.0
OD1 E:ASP223 4.7 26.1 1.0
CA E:HIS97 4.7 24.0 1.0
CG E:GLU268 4.9 27.1 1.0
O E:HIS122 4.9 29.3 1.0
CE2 E:TRP118 5.0 24.3 1.0
CG E:HIS122 5.0 29.6 1.0

Reference:

G.Minasov, Z.Wawrzak, E.Evdokimova, S.Grimshaw, K.Kwon, A.Savchenko, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.7 Angstrom Resolution Crystal Structure of Arginase From Bacillus Subtilis Subsp. Subtilis Str. 168 To Be Published.
Page generated: Tue Oct 1 12:40:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy