Magnesium in PDB 6njo: Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System

The structure of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System also contains other interesting chemical elements:

Fluorine	(F)	12 atoms
Aluminium	(Al)	4 atoms

The binding sites of Magnesium atom in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System (pdb code 6njo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System, PDB code: 6njo:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:28.3 occ:1.00 OG B:SER184 1.7 28.6 1.0 O2B B:ADP600 2.3 33.5 1.0 O B:HOH1002 2.4 30.2 1.0 O B:HOH1001 2.4 34.2 1.0 F2 B:AF3602 2.5 34.8 1.0 CB B:SER184 3.0 28.1 1.0 PB B:ADP600 3.7 32.6 1.0 OD2 B:ASP266 3.9 24.7 1.0 OE1 B:GLU210 4.0 36.7 1.0 CA B:SER184 4.0 27.8 1.0 OD1 B:ASP266 4.0 25.2 1.0 N B:SER184 4.1 27.5 1.0 OE1 B:GLU206 4.1 30.8 1.0 OE2 B:GLU210 4.1 38.5 1.0 AL B:AF3602 4.1 36.9 1.0 O1B B:ADP600 4.3 35.6 1.0 CG B:ASP266 4.4 24.8 1.0 O B:HOH1004 4.4 36.9 1.0 O3B B:ADP600 4.4 36.4 1.0 CD B:GLU210 4.4 39.1 1.0 NZ B:LYS183 4.5 25.1 1.0 O1A B:ADP600 4.5 30.5 1.0 CD B:GLU206 4.6 30.4 1.0 O3A B:ADP600 4.7 33.9 1.0 O2A B:ADP600 4.7 31.0 1.0 PA B:ADP600 4.9 31.9 1.0 NH2 B:ARG207 4.9 37.1 1.0

Magnesium binding site 2 out of 4 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:15.7 occ:1.00 OG C:SER184 1.9 16.4 1.0 O C:HOH1002 2.2 22.4 1.0 O2B C:ADP600 2.2 18.1 1.0 O C:HOH1001 2.4 19.8 1.0 F2 C:AF3602 2.8 19.7 1.0 CB C:SER184 3.1 16.4 1.0 PB C:ADP600 3.6 17.2 1.0 OD1 C:ASP266 3.7 20.4 1.0 N C:SER184 3.8 16.3 1.0 CA C:SER184 3.9 16.2 1.0 OD2 C:ASP266 4.0 20.0 1.0 CG C:ASP266 4.2 20.1 1.0 AL C:AF3602 4.2 21.8 1.0 O1B C:ADP600 4.2 21.0 1.0 O3B C:ADP600 4.4 20.2 1.0 OE1 C:GLU210 4.5 26.6 1.0 OE2 C:GLU210 4.5 28.4 1.0 CD C:GLU206 4.6 21.0 1.0 CG C:GLU206 4.7 20.6 1.0 F1 C:AF3602 4.7 24.1 1.0 O3A C:ADP600 4.7 18.4 1.0 NZ C:LYS183 4.8 12.9 1.0 OE1 C:GLU206 4.8 21.4 1.0 O C:HOH1003 4.8 21.9 1.0 CB C:LYS183 4.8 12.6 1.0 O1A C:ADP600 4.8 15.6 1.0 O2A C:ADP600 4.9 15.1 1.0 CD C:GLU210 4.9 28.9 1.0 C C:LYS183 4.9 12.5 1.0 NH1 C:ARG207 4.9 22.6 1.0 OE2 C:GLU206 5.0 21.0 1.0 PA C:ADP600 5.0 16.4 1.0

Magnesium binding site 3 out of 4 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:15.4 occ:1.00 OG D:SER184 2.2 16.6 1.0 O2B D:ADP600 2.2 16.5 1.0 O D:HOH1002 2.3 18.2 1.0 O D:HOH1001 2.5 17.8 1.0 F2 D:AF3602 2.5 20.4 1.0 CB D:SER184 3.3 16.2 1.0 OE1 D:GLU206 3.4 22.0 1.0 PB D:ADP600 3.4 15.7 1.0 OD2 D:ASP266 3.6 17.8 1.0 O3B D:ADP600 3.8 18.7 1.0 CD D:GLU206 3.9 21.7 1.0 OE2 D:GLU210 3.9 26.6 1.0 AL D:AF3602 4.0 22.6 1.0 OD1 D:ASP266 4.1 17.3 1.0 OE1 D:GLU210 4.1 25.9 1.0 O1B D:ADP600 4.1 19.5 1.0 N D:SER184 4.2 16.7 1.0 CG D:ASP266 4.2 17.6 1.0 CA D:SER184 4.3 16.3 1.0 NH2 D:ARG207 4.3 24.8 1.0 CD D:GLU210 4.4 27.6 1.0 OE2 D:GLU206 4.5 21.9 1.0 CG D:GLU206 4.5 21.2 1.0 O D:HOH1003 4.6 24.3 1.0 O3A D:ADP600 4.7 16.9 1.0 NZ D:LYS183 4.9 13.7 1.0 F3 D:AF3602 5.0 20.8 1.0

Magnesium binding site 4 out of 4 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:23.9 occ:1.00 OG E:SER184 2.3 22.5 1.0 O E:HOH1002 2.4 25.5 1.0 F2 E:AF3602 2.4 24.8 1.0 O E:HOH1001 2.5 28.7 1.0 O3B E:ADP600 3.5 27.0 1.0 O1B E:ADP600 3.6 24.8 1.0 OD2 E:ASP266 3.7 25.6 1.0 CB E:SER184 3.7 22.8 1.0 OE2 E:GLU210 3.7 34.7 1.0 OE1 E:GLU206 3.7 26.1 1.0 OD1 E:ASP266 4.0 26.8 1.0 OE1 E:GLU210 4.0 35.1 1.0 AL E:AF3602 4.1 26.9 1.0 PB E:ADP600 4.1 23.9 1.0 CG E:ASP266 4.2 26.2 1.0 CD E:GLU206 4.2 26.4 1.0 CD E:GLU210 4.3 34.7 1.0 CG E:GLU206 4.5 26.2 1.0 NH1 E:ARG207 4.7 24.1 1.0 CA E:SER184 4.7 23.2 1.0 O E:HOH1003 4.7 28.3 1.0 CB E:GLU206 4.8 26.6 1.0 N E:SER184 4.8 23.3 1.0 O E:HOH1004 4.9 21.9 1.0 OE2 E:GLU206 4.9 26.8 1.0 NH2 E:ARG207 4.9 23.9 1.0 NZ E:LYS183 5.0 20.2 1.0

D.D.Majewski, L.J.Worrall, C.Hong, C.E.Atkinson, M.Vuckovic, N.Watanabe, Z.Yu, N.C.J.Strynadka. Cryo-Em Structure of the Homohexameric T3SS Atpase-Central Stalk Complex Reveals Rotary Atpase-Like Asymmetry. Nat Commun V. 10 626 2019.
ISSN: ESSN 2041-1723
PubMed: 30733444
DOI: 10.1038/S41467-019-08477-7