Magnesium in PDB 6nma: Cryoem Structure of the LBCAS12A-Crrna-ACRVA4 Complex

The binding sites of Magnesium atom in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4 Complex (pdb code 6nma). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4 Complex, PDB code: 6nma:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the LBCAS12A-Crrna-ACRVA4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:99.0 occ:1.00 NZ A:LYS202 2.0 80.5 1.0 CE A:LYS202 2.5 80.5 1.0 OP2 G:A10 3.5 73.5 1.0 CD A:LYS202 4.0 80.5 1.0 OP2 G:A4 4.3 76.7 1.0 CG A:LYS202 4.6 80.5 1.0 O4 G:U5 4.7 70.2 1.0 OP2 G:U9 4.8 70.3 1.0 P G:A10 5.0 73.5 1.0 O2' G:A3 5.0 83.2 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the LBCAS12A-Crrna-ACRVA4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1301 b:99.0 occ:1.00 OP2 G:A19 2.0 75.0 1.0 O B:THR716 2.5 72.1 1.0 P G:A19 3.4 75.0 1.0 C B:THR716 3.7 72.1 1.0 O5' G:A19 3.9 75.0 1.0 OD1 B:ASP708 4.1 75.3 1.0 O3' G:U18 4.4 76.6 1.0 N B:THR716 4.4 72.1 1.0 OP1 G:A19 4.4 75.0 1.0 C3' G:U18 4.5 76.6 1.0 C8 G:A19 4.6 75.0 1.0 CA B:THR716 4.6 72.1 1.0 OP2 G:U18 4.6 76.6 1.0 C B:PRO717 4.6 68.9 1.0 N7 G:A19 4.6 75.0 1.0 OD1 B:ASN718 4.6 67.0 1.0 CA B:PRO717 4.7 68.9 1.0 N B:PRO717 4.7 68.9 1.0 O5' G:U18 4.7 76.6 1.0 OP1 G:U18 4.8 76.6 1.0 O B:PRO717 4.9 68.9 1.0 N B:ASN718 4.9 67.0 1.0 P G:U18 4.9 76.6 1.0 OP2 G:G20 4.9 71.7 1.0 CB B:THR716 4.9 72.1 1.0 CG B:ASP708 5.0 75.3 1.0

H.Zhang, Z.Li, C.M.Daczkowski, C.Gabel, A.D.Mesecar, L.Chang. Structural Basis For the Inhibition of Crispr-CAS12A By Anti-Crispr Proteins. Cell Host Microbe V. 25 815 2019.
ISSN: ESSN 1934-6069
PubMed: 31155345
DOI: 10.1016/J.CHOM.2019.05.004