Magnesium in PDB 6nmd: Cryo-Em Structure of the LBCAS12A-Crrna-ACRVA1 Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of the LBCAS12A-Crrna-ACRVA1 Complex (pdb code 6nmd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the LBCAS12A-Crrna-ACRVA1 Complex, PDB code: 6nmd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the LBCAS12A-Crrna-ACRVA1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the LBCAS12A-Crrna-ACRVA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:0.1 occ:1.00 OP2 G:A19 2.0 0.1 1.0 O A:THR716 2.1 0.1 1.0 C A:THR716 3.3 0.1 1.0 P G:A19 3.5 0.1 1.0 OP2 G:U18 3.9 0.1 1.0 NZ A:LYS707 4.0 0.1 1.0 CA A:PRO717 4.1 0.1 1.0 C A:PRO717 4.1 0.1 1.0 N A:PRO717 4.1 0.1 1.0 O5' G:A19 4.1 0.1 1.0 O A:PRO717 4.3 0.1 1.0 N A:THR716 4.3 0.1 1.0 OG1 A:THR716 4.3 0.1 1.0 CA A:THR716 4.3 0.1 1.0 OP1 G:A19 4.4 0.1 1.0 C3' G:U18 4.4 0.1 1.0 O3' G:U18 4.4 0.1 1.0 OP1 G:U18 4.5 0.1 1.0 P G:U18 4.5 0.1 1.0 OD1 A:ASP708 4.5 0.1 1.0 O5' G:U18 4.6 0.1 1.0 OD1 A:ASN718 4.7 0.1 1.0 N A:ASN718 4.8 0.1 1.0 C A:GLY715 4.8 0.1 1.0 CB A:THR716 4.9 0.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the LBCAS12A-Crrna-ACRVA1 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the LBCAS12A-Crrna-ACRVA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg101 b:42.6 occ:1.00 O G:HOH201 2.0 41.0 1.0 O G:HOH203 2.0 40.1 1.0 O G:HOH204 2.0 35.3 1.0 O G:HOH205 2.0 45.7 1.0 O A:HOH1401 2.0 49.4 1.0 O G:HOH202 2.1 37.4 1.0 O4 G:U5 3.7 0.1 1.0 OP2 G:A4 3.7 0.1 1.0 OP2 G:A10 4.1 0.1 1.0 OP2 G:U9 4.4 0.1 1.0 C4 G:U5 4.7 0.1 1.0 OP1 G:A4 4.7 0.1 1.0 P G:A4 4.7 0.1 1.0

H.Zhang, Z.Li, C.M.Daczkowski, C.Gabel, A.D.Mesecar, L.Chang. Structural Basis For the Inhibition of Crispr-CAS12A By Anti-Crispr Proteins. Cell Host Microbe V. 25 815 2019.
ISSN: ESSN 1934-6069
PubMed: 31155345
DOI: 10.1016/J.CHOM.2019.05.004