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Magnesium in PDB 6no4: Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase

Enzymatic activity of Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase

All present enzymatic activity of Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase:
6.2.1.5;

Protein crystallography data

The structure of Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase, PDB code: 6no4 was solved by J.Huang, M.E.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.87 / 2.24
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.252, 95.787, 68.873, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 25.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase (pdb code 6no4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase, PDB code: 6no4:

Magnesium binding site 1 out of 1 in 6no4

Go back to Magnesium Binding Sites List in 6no4
Magnesium binding site 1 out of 1 in the Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adp Bound to L227BF Mutant Atp-Grasp Fold of Blastocystis Hominis Succinyl-Coa Synthetase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:57.6
occ:1.00
 OD1 A:ASP220 2.1 98.2 1.0
O B:HOH317 2.1 61.4 1.0
O A:HOH404 2.1 61.5 1.0
O A:HOH401 2.1 52.9 1.0
O B:HOH301 2.1 64.3 1.0
OD1 B:ASP220 2.2 82.4 1.0
OD2 A:ASP220 2.2 93.9 1.0
CG A:ASP220 2.4 88.3 1.0
CG B:ASP220 3.2 73.5 1.0
OD2 B:ASP220 3.6 78.5 1.0
CB A:ASP220 3.8 77.5 1.0
HA A:ASP220 4.0 79.2 1.0
HB3 A:ASP220 4.0 93.0 1.0
HD2 B:LYS114 4.1 72.8 1.0
OE2 A:GLU216 4.1 92.4 1.0
CA A:ASP220 4.3 65.9 1.0
HB3 A:GLU216 4.4 78.3 1.0
OE2 B:GLU216 4.4 73.2 1.0
HB2 A:ASP220 4.4 93.0 1.0
HA B:ASP220 4.4 70.4 1.0
O A:PRO218 4.4 58.2 1.0
HD2 A:LYS114 4.5 96.4 1.0
CB B:ASP220 4.5 66.0 1.0
O A:THR217 4.5 55.7 1.0
N A:ASP220 4.6 62.9 1.0
O B:PRO218 4.6 48.0 1.0
H A:ASP220 4.7 75.6 1.0
HZ1 B:LYS114 4.8 80.2 1.0
HB3 B:ASP220 4.8 79.2 1.0
HZ2 A:LYS114 4.8 0.3 1.0
CA B:ASP220 4.9 58.6 1.0
H B:ASP220 4.9 68.9 1.0
CD A:GLU216 4.9 84.5 1.0
HB3 B:GLU216 5.0 74.8 1.0

Reference:

J.Huang, V.H.Nguyen, K.A.Hamblin, R.Maytum, M.Van Der Giezen, M.E.Fraser. Atp-Specificity of Succinyl-Coa Synthetase From Blastocystis Hominis. Acta Crystallogr D Struct V. 75 647 2019BIOL.
ISSN: ISSN 2059-7983
PubMed: 31282474
DOI: 10.1107/S2059798319007976
Page generated: Tue Oct 1 12:50:13 2024

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