Magnesium in PDB 6nz0: Cryo-Em Structure of Aav-2 in Complex with Aavr Pkd Domains 1 and 2

The binding sites of Magnesium atom in the Cryo-Em Structure of Aav-2 in Complex with Aavr Pkd Domains 1 and 2 (pdb code 6nz0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Aav-2 in Complex with Aavr Pkd Domains 1 and 2, PDB code: 6nz0:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Aav-2 in Complex with Aavr Pkd Domains 1 and 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Aav-2 in Complex with Aavr Pkd Domains 1 and 2 within 5.0Å range: probe atom residue distance (Å) B Occ Z:Mg601 b:24.9 occ:1.00 OD2 Z:ASP481 2.4 35.2 0.7 O Z:ARG406 2.6 37.1 0.7 OD1 Z:ASP436 2.7 29.4 0.7 OD2 Z:ASP435 2.8 31.9 0.7 OD1 Z:ASP481 2.8 35.4 0.7 CG Z:ASP481 2.9 35.2 0.7 OD2 Z:ASP436 3.1 29.1 0.7 CG Z:ASP436 3.2 29.3 0.7 OD1 Z:ASN405 3.4 37.4 0.7 C Z:ARG406 3.8 37.1 0.7 CG Z:ASP435 3.8 32.0 0.7 CG Z:ASN405 3.9 37.5 0.7 N Z:ASP437 4.0 30.4 0.7 CB Z:ASN405 4.0 37.8 0.7 CB Z:ASP435 4.1 31.6 0.7 N Z:ARG406 4.2 37.8 0.7 CB Z:ASP437 4.3 31.8 0.7 N Z:ASP436 4.3 29.8 0.7 CB Z:ASP481 4.4 34.9 0.7 CB Z:ASP436 4.5 29.5 0.7 CA Z:ARG406 4.6 38.0 0.7 N Z:PRO408 4.7 33.5 0.7 C Z:PRO407 4.7 34.7 0.7 N Z:PRO407 4.7 36.5 0.7 CA Z:ASP437 4.7 31.3 0.7 CA Z:PRO407 4.7 35.8 0.7 CA Z:ASP436 4.8 29.5 0.7 CD Z:PRO408 4.8 33.1 0.7 C Z:ASP435 4.9 30.1 0.7 ND2 Z:ASN405 4.9 37.6 0.7 C Z:ASP436 4.9 29.7 0.7 C Z:ASN405 4.9 37.7 0.7 OD1 Z:ASP435 4.9 32.4 0.7

N.L.Meyer, G.Hu, O.Davulcu, Q.Xie, A.J.Noble, C.Yoshioka, D.S.Gingerich, A.Trzynka, L.David, S.M.Stagg, M.S.Chapman. Structure of the Gene Therapy Vector, Adeno-Associated Virus with Its Cell Receptor, Aavr. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 31115336
DOI: 10.7554/ELIFE.44707