Magnesium in PDB 6o2r: Deacetylated Microtubules

The binding sites of Magnesium atom in the Deacetylated Microtubules (pdb code 6o2r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Deacetylated Microtubules, PDB code: 6o2r:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Deacetylated Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Deacetylated Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:67.6 occ:1.00 O1B A:GTP501 1.9 72.4 1.0 O3G A:GTP501 2.1 72.4 1.0 OE2 A:GLU71 2.6 79.5 1.0 PB A:GTP501 3.1 72.4 1.0 PG A:GTP501 3.3 72.4 1.0 CD A:GLU71 3.3 79.5 1.0 O3A A:GTP501 3.5 72.4 1.0 OD1 A:ASP69 3.5 76.0 1.0 O3B A:GTP501 3.6 72.4 1.0 OD2 A:ASP69 3.7 76.0 1.0 CG A:GLU71 3.8 79.5 1.0 CB A:GLN11 3.8 69.1 1.0 N A:GLN11 3.8 69.1 1.0 O2G A:GTP501 4.0 72.4 1.0 CG A:ASP69 4.0 76.0 1.0 OE1 A:GLU71 4.2 79.5 1.0 OE1 A:GLN11 4.2 69.1 1.0 OG1 A:THR145 4.3 72.2 1.0 O2B A:GTP501 4.4 72.4 1.0 CA A:GLN11 4.4 69.1 1.0 O1G A:GTP501 4.5 72.4 1.0 PA A:GTP501 4.5 72.4 1.0 O2A A:GTP501 4.6 72.4 1.0 C A:GLY10 4.7 68.7 1.0 CB A:ASP98 4.7 83.9 1.0 CB A:THR145 4.8 72.2 1.0 O1A A:GTP501 4.8 72.4 1.0 CA A:GLY10 4.8 68.7 1.0 CG A:GLN11 4.9 69.1 1.0 NZ H:LYS254 5.0 78.0 1.0 CD A:GLN11 5.0 69.1 1.0

Magnesium binding site 2 out of 6 in the Deacetylated Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Deacetylated Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:85.0 occ:1.00 O1B C:GTP501 1.9 91.9 1.0 O3G C:GTP501 2.1 91.9 1.0 OE2 C:GLU71 2.6 96.2 1.0 PB C:GTP501 3.1 91.9 1.0 PG C:GTP501 3.3 91.9 1.0 CD C:GLU71 3.3 96.2 1.0 O3A C:GTP501 3.5 91.9 1.0 OD1 C:ASP69 3.6 93.9 1.0 O3B C:GTP501 3.6 91.9 1.0 OD2 C:ASP69 3.7 93.9 1.0 CG C:GLU71 3.8 96.2 1.0 CB C:GLN11 3.8 87.3 1.0 N C:GLN11 3.8 87.3 1.0 O2G C:GTP501 4.0 91.9 1.0 CG C:ASP69 4.0 93.9 1.0 OE1 C:GLU71 4.2 96.2 1.0 OE1 C:GLN11 4.2 87.3 1.0 OG1 C:THR145 4.3 91.6 1.0 O2B C:GTP501 4.4 91.9 1.0 CA C:GLN11 4.4 87.3 1.0 O1G C:GTP501 4.5 91.9 1.0 PA C:GTP501 4.5 91.9 1.0 O2A C:GTP501 4.6 91.9 1.0 C C:GLY10 4.7 88.9 1.0 CB C:ASP98 4.7 0.8 1.0 CB C:THR145 4.8 91.6 1.0 O1A C:GTP501 4.8 91.9 1.0 NZ I:LYS254 4.8 96.0 1.0 CA C:GLY10 4.8 88.9 1.0 CG C:GLN11 4.9 87.3 1.0 CD C:GLN11 5.0 87.3 1.0

Magnesium binding site 3 out of 6 in the Deacetylated Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Deacetylated Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:90.3 occ:1.00 O1B E:GTP501 1.9 91.1 1.0 O3G E:GTP501 2.1 91.1 1.0 OE2 E:GLU71 2.6 96.9 1.0 PB E:GTP501 3.1 91.1 1.0 PG E:GTP501 3.3 91.1 1.0 CD E:GLU71 3.3 96.9 1.0 O3A E:GTP501 3.5 91.1 1.0 OD1 E:ASP69 3.6 94.0 1.0 O3B E:GTP501 3.6 91.1 1.0 OD2 E:ASP69 3.7 94.0 1.0 CG E:GLU71 3.8 96.9 1.0 CB E:GLN11 3.8 86.3 1.0 N E:GLN11 3.8 86.3 1.0 O2G E:GTP501 4.0 91.1 1.0 CG E:ASP69 4.0 94.0 1.0 OE1 E:GLU71 4.2 96.9 1.0 OE1 E:GLN11 4.2 86.3 1.0 OG1 E:THR145 4.3 92.4 1.0 O2B E:GTP501 4.4 91.1 1.0 CA E:GLN11 4.4 86.3 1.0 O1G E:GTP501 4.5 91.1 1.0 PA E:GTP501 4.5 91.1 1.0 O2A E:GTP501 4.6 91.1 1.0 C E:GLY10 4.7 86.8 1.0 CB E:ASP98 4.7 99.1 1.0 NZ G:LYS254 4.7 96.5 1.0 CB E:THR145 4.8 92.4 1.0 O1A E:GTP501 4.8 91.1 1.0 CA E:GLY10 4.8 86.8 1.0 CG E:GLN11 4.9 86.3 1.0 CD E:GLN11 5.0 86.3 1.0

Magnesium binding site 4 out of 6 in the Deacetylated Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Deacetylated Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg502 b:93.2 occ:1.00 O1B J:GTP501 1.9 95.1 1.0 O3G J:GTP501 2.1 95.1 1.0 OE2 J:GLU71 2.6 95.5 1.0 PB J:GTP501 3.1 95.1 1.0 PG J:GTP501 3.3 95.1 1.0 CD J:GLU71 3.3 95.5 1.0 O3A J:GTP501 3.5 95.1 1.0 OD1 J:ASP69 3.5 96.7 1.0 O3B J:GTP501 3.6 95.1 1.0 OD2 J:ASP69 3.7 96.7 1.0 CG J:GLU71 3.8 95.5 1.0 CB J:GLN11 3.8 88.9 1.0 N J:GLN11 3.8 88.9 1.0 O2G J:GTP501 4.0 95.1 1.0 CG J:ASP69 4.0 96.7 1.0 OE1 J:GLU71 4.2 95.5 1.0 OE1 J:GLN11 4.2 88.9 1.0 OG1 J:THR145 4.3 96.5 1.0 O2B J:GTP501 4.4 95.1 1.0 CA J:GLN11 4.4 88.9 1.0 O1G J:GTP501 4.5 95.1 1.0 PA J:GTP501 4.5 95.1 1.0 O2A J:GTP501 4.6 95.1 1.0 C J:GLY10 4.7 90.8 1.0 CB J:ASP98 4.7 98.8 1.0 NZ F:LYS254 4.8 89.2 1.0 CB J:THR145 4.8 96.5 1.0 O1A J:GTP501 4.8 95.1 1.0 CA J:GLY10 4.8 90.8 1.0 CG J:GLN11 4.9 88.9 1.0 CD J:GLN11 5.0 88.9 1.0

Magnesium binding site 5 out of 6 in the Deacetylated Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Deacetylated Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg502 b:72.7 occ:1.00 O1B K:GTP501 1.9 79.2 1.0 O3G K:GTP501 2.1 79.2 1.0 OE2 K:GLU71 2.6 78.1 1.0 PB K:GTP501 3.1 79.2 1.0 PG K:GTP501 3.3 79.2 1.0 CD K:GLU71 3.3 78.1 1.0 O3A K:GTP501 3.5 79.2 1.0 OD1 K:ASP69 3.5 79.5 1.0 O3B K:GTP501 3.6 79.2 1.0 OD2 K:ASP69 3.7 79.5 1.0 CG K:GLU71 3.8 78.1 1.0 CB K:GLN11 3.8 73.2 1.0 N K:GLN11 3.8 73.2 1.0 O2G K:GTP501 4.0 79.2 1.0 CG K:ASP69 4.0 79.5 1.0 OE1 K:GLU71 4.2 78.1 1.0 OE1 K:GLN11 4.2 73.2 1.0 OG1 K:THR145 4.3 77.9 1.0 O2B K:GTP501 4.4 79.2 1.0 CA K:GLN11 4.4 73.2 1.0 O1G K:GTP501 4.5 79.2 1.0 PA K:GTP501 4.5 79.2 1.0 O2A K:GTP501 4.6 79.2 1.0 NZ B:LYS254 4.7 71.3 1.0 C K:GLY10 4.7 76.1 1.0 CB K:ASP98 4.7 81.7 1.0 CB K:THR145 4.8 77.9 1.0 O1A K:GTP501 4.8 79.2 1.0 CA K:GLY10 4.8 76.1 1.0 CG K:GLN11 4.9 73.2 1.0 CD K:GLN11 5.0 73.2 1.0

Magnesium binding site 6 out of 6 in the Deacetylated Microtubules


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Deacetylated Microtubules within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg502 b:93.4 occ:1.00 O1B L:GTP501 1.9 0.8 1.0 O3G L:GTP501 2.1 0.8 1.0 OE2 L:GLU71 2.6 99.4 1.0 PB L:GTP501 3.1 0.8 1.0 PG L:GTP501 3.3 0.8 1.0 CD L:GLU71 3.3 99.4 1.0 O3A L:GTP501 3.5 0.8 1.0 OD1 L:ASP69 3.5 0.8 1.0 O3B L:GTP501 3.6 0.8 1.0 OD2 L:ASP69 3.7 0.8 1.0 CG L:GLU71 3.8 99.4 1.0 CB L:GLN11 3.8 94.8 1.0 N L:GLN11 3.8 94.8 1.0 O2G L:GTP501 4.0 0.8 1.0 CG L:ASP69 4.0 0.8 1.0 OE1 L:GLU71 4.2 99.4 1.0 OE1 L:GLN11 4.2 94.8 1.0 OG1 L:THR145 4.3 0.4 1.0 O2B L:GTP501 4.4 0.8 1.0 CA L:GLN11 4.4 94.8 1.0 O1G L:GTP501 4.5 0.8 1.0 PA L:GTP501 4.5 0.8 1.0 O2A L:GTP501 4.6 0.8 1.0 C L:GLY10 4.7 97.5 1.0 CB L:ASP98 4.7 0.0 1.0 NZ D:LYS254 4.8 91.5 1.0 CB L:THR145 4.8 0.4 1.0 O1A L:GTP501 4.8 0.8 1.0 CA L:GLY10 4.8 97.5 1.0 CG L:GLN11 4.9 94.8 1.0 CD L:GLN11 5.0 94.8 1.0

L.Eshun-Wilson, R.Zhang, D.Portran, M.V.Nachury, D.B.Toso, T.Lohr, M.Vendruscolo, M.Bonomi, J.S.Fraser, E.Nogales. Effects of Alpha-Tubulin Acetylation on Microtubule Structure and Stability. Proc.Natl.Acad.Sci.Usa V. 116 10366 2019.
ISSN: ESSN 1091-6490
PubMed: 31072936
DOI: 10.1073/PNAS.1900441116