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Magnesium in PDB 6o4n: Crystal Structure of Enolase From Chlamydia Trachomatis

Enzymatic activity of Crystal Structure of Enolase From Chlamydia Trachomatis

All present enzymatic activity of Crystal Structure of Enolase From Chlamydia Trachomatis:
4.2.1.11;

Protein crystallography data

The structure of Crystal Structure of Enolase From Chlamydia Trachomatis, PDB code: 6o4n was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.88 / 1.80
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 164.280, 164.280, 89.790, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 16.3

Other elements in 6o4n:

The structure of Crystal Structure of Enolase From Chlamydia Trachomatis also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase From Chlamydia Trachomatis (pdb code 6o4n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Crystal Structure of Enolase From Chlamydia Trachomatis, PDB code: 6o4n:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6o4n

Go back to Magnesium Binding Sites List in 6o4n
Magnesium binding site 1 out of 5 in the Crystal Structure of Enolase From Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase From Chlamydia Trachomatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg505

b:18.7
occ:1.00
 O A:HOH862 2.0 16.4 1.0
O A:SER44 2.1 21.0 1.0
O A:HOH678 2.1 17.4 1.0
O2 A:PO4504 2.1 16.8 1.0
OG A:SER44 2.1 22.6 1.0
O A:HOH701 2.1 17.7 1.0
C A:SER44 3.1 21.3 1.0
CB A:SER44 3.1 20.9 1.0
P A:PO4504 3.2 18.1 1.0
O1 A:PO4504 3.5 18.4 1.0
CA A:SER44 3.5 20.0 1.0
MG A:MG506 3.8 12.1 1.0
OD2 A:ASP310 3.8 19.8 1.0
NZ A:LYS335 3.8 19.6 1.0
O3 A:PO4504 3.9 19.4 1.0
N A:SER44 4.0 19.3 1.0
O A:HOH684 4.0 16.0 1.0
OD1 A:ASP311 4.1 20.3 1.0
NE2 A:GLN165 4.2 18.0 1.0
OD2 A:ASP311 4.2 20.9 1.0
NH2 A:ARG364 4.2 16.8 1.0
N A:THR45 4.2 19.0 1.0
OE1 A:GLN165 4.3 20.8 1.0
O A:HOH666 4.3 16.1 1.0
O4 A:PO4504 4.5 18.2 1.0
CG A:ASP311 4.6 21.4 1.0
CA A:THR45 4.7 20.0 1.0
CD A:GLN165 4.7 18.6 1.0
CG A:ASP310 4.9 20.3 1.0
O A:HOH843 5.0 22.7 1.0

Magnesium binding site 2 out of 5 in 6o4n

Go back to Magnesium Binding Sites List in 6o4n
Magnesium binding site 2 out of 5 in the Crystal Structure of Enolase From Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase From Chlamydia Trachomatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg506

b:12.1
occ:1.00
 O A:HOH666 2.1 16.1 1.0
O A:HOH862 2.1 16.4 1.0
OE2 A:GLU283 2.1 18.4 1.0
OD2 A:ASP244 2.2 20.7 1.0
OD2 A:ASP310 2.3 19.8 1.0
O A:HOH684 2.3 16.0 1.0
CG A:ASP244 3.2 18.6 1.0
CD A:GLU283 3.3 19.5 1.0
CG A:ASP310 3.3 20.3 1.0
OD1 A:ASP244 3.5 16.7 1.0
NZ A:LYS335 3.6 19.6 1.0
NZ A:LYS386 3.6 17.8 1.0
MG A:MG505 3.8 18.7 1.0
CB A:ASP310 3.8 17.0 1.0
O A:HOH678 3.9 17.4 1.0
O A:HOH701 3.9 17.7 1.0
NE2 A:GLN165 3.9 18.0 1.0
OE1 A:GLU283 4.0 18.5 1.0
CD2 A:LEU333 4.2 15.4 1.0
CG A:GLU283 4.3 16.9 1.0
OD2 A:ASP284 4.3 19.8 1.0
OD1 A:ASP310 4.4 19.3 1.0
O1 A:PO4504 4.5 18.4 1.0
CB A:ASP244 4.5 15.6 1.0
OE2 A:GLU166 4.5 20.0 1.0
O2 A:PO4504 4.8 16.8 1.0
CE A:LYS335 4.8 19.5 1.0
O A:HOH617 4.9 22.1 1.0
CE A:LYS386 4.9 15.4 1.0

Magnesium binding site 3 out of 5 in 6o4n

Go back to Magnesium Binding Sites List in 6o4n
Magnesium binding site 3 out of 5 in the Crystal Structure of Enolase From Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Enolase From Chlamydia Trachomatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg511

b:41.1
occ:1.00
 O A:HOH954 2.3 31.0 1.0
O A:THR45 2.4 22.5 1.0
O A:HOH990 2.5 38.4 1.0
O A:HOH973 2.5 39.0 1.0
OG1 A:THR45 2.6 24.6 1.0
O A:HOH978 2.7 49.7 1.0
C A:THR45 3.4 20.1 1.0
N A:THR45 3.7 19.0 1.0
CB A:THR45 3.7 23.0 1.0
CA A:THR45 3.7 20.0 1.0
O A:HOH695 4.1 29.8 1.0
O A:HOH690 4.2 27.1 1.0
O A:HOH1102 4.2 61.4 1.0
N A:GLY46 4.5 21.5 1.0
O A:HOH843 4.5 22.7 1.0
O A:HOH817 4.7 34.7 1.0
O A:ALA43 4.7 20.3 1.0
C A:SER44 4.7 21.3 1.0
C A:GLY46 4.7 20.0 1.0
O A:HOH741 4.8 25.4 1.0
O A:GLY46 4.8 19.8 1.0
O A:HOH648 4.9 36.2 1.0
O A:HOH1082 4.9 47.0 1.0
CG2 A:THR45 4.9 21.4 1.0
CA A:GLY46 5.0 22.4 1.0
N A:ILE47 5.0 21.1 1.0

Magnesium binding site 4 out of 5 in 6o4n

Go back to Magnesium Binding Sites List in 6o4n
Magnesium binding site 4 out of 5 in the Crystal Structure of Enolase From Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Enolase From Chlamydia Trachomatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1604

b:26.7
occ:1.00
 O B:HOH1856 1.9 22.6 1.0
O B:HOH1783 2.0 22.8 1.0
O1 B:PO41603 2.1 25.5 1.0
O B:SER44 2.1 29.8 1.0
O B:HOH1811 2.1 28.4 1.0
OG B:SER44 2.1 31.1 1.0
C B:SER44 3.1 32.4 1.0
CB B:SER44 3.1 30.0 1.0
P B:PO41603 3.2 25.9 1.0
O2 B:PO41603 3.4 28.5 1.0
CA B:SER44 3.6 29.1 1.0
MG B:MG1605 3.8 21.4 1.0
OD2 B:ASP310 3.8 28.1 1.0
O3 B:PO41603 3.8 25.6 1.0
NZ B:LYS335 3.8 28.9 1.0
O B:HOH1720 4.1 26.8 1.0
N B:SER44 4.1 27.7 1.0
OD1 B:ASP311 4.1 29.3 1.0
NE2 B:GLN165 4.2 25.4 1.0
OE1 B:GLN165 4.2 28.8 1.0
OD2 B:ASP311 4.2 31.3 1.0
NH2 B:ARG364 4.3 26.0 1.0
O B:HOH1749 4.3 24.6 1.0
N B:THR45 4.3 28.5 1.0
O4 B:PO41603 4.5 21.9 1.0
CG B:ASP311 4.6 29.9 1.0
CD B:GLN165 4.7 27.5 1.0
CA B:THR45 4.8 28.3 1.0
CG B:ASP310 4.9 32.1 1.0
CB B:ALA246 5.0 31.3 1.0

Magnesium binding site 5 out of 5 in 6o4n

Go back to Magnesium Binding Sites List in 6o4n
Magnesium binding site 5 out of 5 in the Crystal Structure of Enolase From Chlamydia Trachomatis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Enolase From Chlamydia Trachomatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1605

b:21.4
occ:1.00
 O B:HOH1749 2.1 24.6 1.0
OE2 B:GLU283 2.1 28.5 1.0
O B:HOH1856 2.2 22.6 1.0
OD2 B:ASP310 2.2 28.1 1.0
OD2 B:ASP244 2.2 31.9 1.0
O B:HOH1720 2.4 26.8 1.0
CG B:ASP244 3.2 28.2 1.0
CD B:GLU283 3.3 33.2 1.0
CG B:ASP310 3.3 32.1 1.0
OD1 B:ASP244 3.5 29.9 1.0
NZ B:LYS386 3.6 25.8 1.0
NZ B:LYS335 3.6 28.9 1.0
MG B:MG1604 3.8 26.7 1.0
O B:HOH1811 3.8 28.4 1.0
CB B:ASP310 3.8 27.9 1.0
NE2 B:GLN165 3.9 25.4 1.0
O B:HOH1783 3.9 22.8 1.0
OE1 B:GLU283 4.0 29.0 1.0
CD2 B:LEU333 4.2 25.5 1.0
CG B:GLU283 4.3 29.1 1.0
O2 B:PO41603 4.3 28.5 1.0
OD2 B:ASP284 4.3 33.6 1.0
OD1 B:ASP310 4.4 28.6 1.0
OE2 B:GLU166 4.5 29.7 1.0
CB B:ASP244 4.5 27.8 1.0
O1 B:PO41603 4.7 25.5 1.0
CE B:LYS335 4.8 24.5 1.0
O B:HOH1719 4.9 29.6 1.0
CB B:ALA246 4.9 31.3 1.0
CE B:LYS386 4.9 25.8 1.0

Reference:

D.M.Dranow, S.J.Mayclin, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Enolase From Chlamydia Trachomatis To Be Published.
Page generated: Tue Oct 1 13:16:04 2024

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